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$345+ Cheap flights from Juneau to San Diego (JNU - SAN)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 6/24. Fares are subject to change and may not be available on all flights or dates of travel.
JNU — SAN
Jun 6 — Jun 131
Sat 6/6
Sat 6/13
1 adult, Economy
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Cheap flight deals from Juneau to San Diego

Cheapest flights from Juneau to San Diego
Explore the most affordable flight options available from Juneau to San Diego. Find the lowest fares from popular airlines and budget airlines, with prices last updated on May 7, 2026.

This Alaska Airlines deal was found by Cheapflights users on 5/3. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 6/29:16 am
JNU
-
SAN
3 stops12h 10m
Alaska Airlines
Tue 6/98:04 pm
SAN
-
JNU
3 stops25h 08m
Alaska Airlines
Deal found 5/3$555
This Alaska Airlines deal was found by Cheapflights users on 5/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 9/227:14 am
JNU
-
SAN
3 stops13h 06m
Alaska Airlines
Wed 9/239:03 pm
SAN
-
JNU
3 stops25h 25m
Alaska Airlines
Deal found 5/5$713
This Alaska Airlines deal was found by Cheapflights users on 5/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 5/199:16 am
JNU
-
SAN
3 stops24h 06m
Alaska Airlines
Wed 5/2012:28 pm
SAN
-
JNU
2 stops9h 59m
Alaska Airlines
Deal found 5/1$790

Find flight deals from Juneau to San Diego

Discover tips and strategies to find the most affordable flight options for your journey from Juneau (JNU) to San Diego (SAN). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated May 7, 2026.

Round-trip from

$555
(Alaska Airlines)

One-way from

$345
(Delta)
From Juneau Intl to San Diego
Search Deals
One-way flight from Juneau Intl to San Diego
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Cheapflights Fare Finder

 
Customize your flight search to find flights from Juneau to San Diego that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated May 7, 2026.
Use the filters below to find and compare flights from Juneau to San Diego that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

JuneauSan Diego

JNU - SAN

JNUSAN

Juneau Intl

Tue 6/2

7:19 am-10:26 pm

2 stops14h 07m

San Diego

Tue 6/9

8:04 pm-8:12 pm

3 stops25h 08m

$555
Quickest round-trip

JuneauSan Diego

JNU - SAN

JNUSAN

Juneau Intl

Tue 9/22

7:14 am-9:20 pm

3 stops13h 06m

San Diego

Wed 9/23

9:03 pm-9:28 pm

3 stops25h 25m

$713
Cheapest one-way

JuneauSan Diego

JNU - SAN

JNUSAN

Juneau Intl

Wed 6/24

5:03 am-5:17 pm

1 stop11h 14m

$345
Quickest one-way

JuneauSan Diego

JNU - SAN

JNUSAN

Juneau Intl

Wed 6/24

7:25 am-7:16 pm

2 stops10h 51m

$351

JuneauSan Diego

JNU - SAN

JNUSAN

Juneau Intl

Mon 7/6

6:59 pm-2:33 pm

2 stops18h 34m

$378

Flights are sorted by cheapest round-trip flights first.

Deals found on 5/3

Sorted by cheapest first

Best time to book a flight from Juneau to San Diego

Have a flexible travel schedule? Discover the best time to fly to San Diego from Juneau with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Related info for your journey

Find useful and relevant information for your journey from Juneau to San Diego. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How long is the flight from Juneau to San Diego?

    Airlines like Alaska Airlines fly from Juneau to San Diego in about 14h 07m. The time it takes to get you to your destination can typically vary by up to . Juneau and San Diego are separated by a distance of 1945 mi.

  • Can I find deals for flights from Juneau to San Diego that include hotel bookings?

    Yes. In addition to deals on Juneau to San Diego flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Juneau to San Diego?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Juneau to San Diego.

  • Can I find deals for business class flights from Juneau to San Diego?

    Yes. Cheapflights offers flight deals from Juneau to San Diego by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Traveling to a place near San Diego?

Book flights to San Diego if you plan to visit one of these locations
El Cajon
Chula Vista
National City
Coronado
La Mesa
Poway
Julian
Lemon Grove

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