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$612+ Cheap flights from Juneau to San Diego (JNU - SAN)

This is the cheapest round-trip flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 9/16. Fares are subject to change and may not be available on all flights or dates of travel.
JNU — SAN
Aug 2 — Aug 91
Sun 8/2
Sun 8/9
1 adult, Economy
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Cheap flight deals from Juneau to San Diego

Cheapest flights from Juneau to San Diego
Explore the most affordable flight options available from Juneau to San Diego. Find the lowest fares from popular airlines and budget airlines, with prices last updated on July 3, 2026.

This Delta deal was found by Cheapflights users on 6/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Delta is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 9/167:34 am
JNU
-
SAN
1 stop6h 38m
Delta
Wed 9/237:00 am
SAN
-
JNU
1 stop12h 16m
Delta
Deal found 6/29$612
This American Airlines deal was found by Cheapflights users on 6/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure American Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 9/167:03 am
JNU
-
SAN
2 stops10h 13m
American Airlines
Wed 9/237:15 am
SAN
-
JNU
1 stop7h 13m
American Airlines
Deal found 6/29$676
This Alaska Airlines deal was found by Cheapflights users on 7/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 8/257:17 am
JNU
-
SAN
3 stops12h 07m
Alaska Airlines
Wed 8/262:17 pm
SAN
-
JNU
2 stops8h 33m
Alaska Airlines
Deal found 7/2$679
This Alaska Airlines deal was found by Cheapflights users on 6/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 9/167:17 am
JNU
-
SAN
3 stops13h 03m
Alaska Airlines
Wed 9/2311:30 am
SAN
-
JNU
2 stops10h 56m
Alaska Airlines
Deal found 6/29$681

Find flight deals from Juneau to San Diego

Discover tips and strategies to find the most affordable flight options for your journey from Juneau (JNU) to San Diego (SAN). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated July 3, 2026.

Round-trip from

$612
(Delta)

One-way from

$326
(Delta)
From Juneau Intl to San Diego
Search Deals
One-way flight from Juneau Intl to San Diego
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from Juneau to San Diego that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated July 3, 2026.
Use the filters below to find and compare flights from Juneau to San Diego that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip
Quickest round-trip

JuneauSan Diego

JNU - SAN

JNUSAN

Juneau Intl

Wed 9/16

7:34 am-3:12 pm

1 stop6h 38m

San Diego

Wed 9/23

7:00 am-6:16 pm

1 stop12h 16m

$612

JuneauSan Diego

JNU - SAN

JNUSAN

Juneau Intl

Tue 8/25

7:17 am-8:24 pm

3 stops12h 07m

San Diego

Wed 8/26

2:17 pm-9:50 pm

2 stops8h 33m

$679

JuneauSan Diego

JNU - SAN

JNUSAN

Juneau Intl

Wed 9/16

7:17 am-9:20 pm

3 stops13h 03m

San Diego

Wed 9/23

7:15 am-8:09 pm

3 stops13h 54m

$684

Flights are sorted by cheapest round-trip flights first.

Deals found on 6/29

Sorted by cheapest first

Best time to book a flight from Juneau to San Diego

Have a flexible travel schedule? Discover the best time to fly to San Diego from Juneau with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Related info for your journey

Find useful and relevant information for your journey from Juneau to San Diego. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How long is the flight from Juneau to San Diego?

    Airlines like Delta and Alaska Airlines fly from Juneau to San Diego in about 6h 38m. The time it takes to get you to your destination can typically vary by up to 5h 29m. Juneau and San Diego are separated by a distance of 1945 mi. This flight may include one or multiple stops.

  • Can I find deals for flights from Juneau to San Diego that include hotel bookings?

    Yes. In addition to deals on Juneau to San Diego flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Juneau to San Diego?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Juneau to San Diego.

  • Can I find deals for business class flights from Juneau to San Diego?

    Yes. Cheapflights offers flight deals from Juneau to San Diego by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Traveling to a place near San Diego?

Book flights to San Diego if you plan to visit one of these locations
El Cajon
National City
Chula Vista
Poway
La Mesa
Coronado
Santee
Julian
Lemon Grove

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