$289+ Cheap flights from Juneau to San Diego (JNU - SAN)
This is the cheapest round-trip flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 10/21. Fares are subject to change and may not be available on all flights or dates of travel.
JNU — SAN
Nov 1 — Nov 81
Round-trip
1 adult, Economy
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Find cheap flights from Juneau to San Diego with Cheapflights
1. Tell us where you want to go
Enter your travel information like dates, passengers, trip type (one-way or round trip), and preferred cabin class then click “Find deals”2. Select your favorite providers
We find the providers serving your travel needs. Choose up to four travel providers to compare side-by-side for flights, hotels, or car rentals.3. Compare prices and book
Review each provider’s pricing and select the best option for you! Book through your favorite provider’s website for a seamless experience.Cheap flight deals from Juneau to San Diego
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Best
Last-minute
One-way
Cheapest flights from Juneau to San DiegoExplore the most affordable flight options available from Juneau to San Diego. Find the lowest fares from popular airlines and budget airlines, with prices last updated on October 2, 2026.
Explore the most affordable flight options available from Juneau to San Diego. Find the lowest fares from popular airlines and budget airlines, with prices last updated on October 2, 2026.
This Alaska Airlines deal was found by Cheapflights users on 9/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 12/27:00 am -
1 stop14h 59m
Thu 12/36:15 am -
1 stop16h 16m
Deal found 9/30![Alaska Airlines logo]()
$584
This Expedia deal was found by Cheapflights users on 10/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Expedia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 10/292:23 pm -
2 stops16h 59m
Thu 11/51:48 pm -
1 stop8h 49m
Deal found 10/1![Alaska Airlines logo]()
$589
This Alaska Airlines deal was found by Cheapflights users on 9/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/147:16 am -
2 stops11h 27m
Sun 10/186:15 am -
1 stop16h 14m
Deal found 9/29![Alaska Airlines logo]()
$1,056
Best flights from Juneau to San DiegoDiscover carefully curated flight deals from Juneau to San Diego that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated October 2, 2026.
Discover carefully curated flight deals from Juneau to San Diego that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated October 2, 2026.
This Alaska Airlines deal was found by Cheapflights users on 10/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 12/26:33 pm -
2 stops18h 20m
Thu 12/35:38 pm -
1 stop16h 16m
Deal found 10/1![Alaska Airlines logo]()
$584
This Expedia deal was found by Cheapflights users on 10/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Expedia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 10/292:23 pm -
2 stops16h 49m
Thu 11/510:07 am -
3 stops12h 21m
Deal found 10/1![Alaska Airlines logo]()
$716
This Alaska Airlines deal was found by Cheapflights users on 9/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/149:43 am -
1 stop12h 43m
Sun 10/186:15 am -
1 stop16h 14m
Deal found 9/29![Alaska Airlines logo]()
$1,056
Last-minute flights from Juneau to San DiegoDiscover last-minute flight deals from Juneau to San Diego. Data last updated October 2, 2026 and is based on user searches.
Discover last-minute flight deals from Juneau to San Diego. Data last updated October 2, 2026 and is based on user searches.
This Alaska Airlines deal was found by Cheapflights users on 9/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/149:43 am -
1 stop12h 43m
Sun 10/186:15 am -
1 stop16h 14m
Deal found 9/29![Alaska Airlines logo]()
$1,056
This Expedia deal was found by Cheapflights users on 10/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Expedia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 10/292:23 pm -
2 stops16h 59m
Thu 11/511:32 am -
2 stops10h 56m
Deal found 10/1![Alaska Airlines logo]()
$584
One-way flights from Juneau to San DiegoSearch for one-way flight options from Juneau to San Diego. Find affordable one-way fares based on user searches. Data last updated October 2, 2026.
Search for one-way flight options from Juneau to San Diego. Find affordable one-way fares based on user searches. Data last updated October 2, 2026.
This Alaska Airlines deal was found by Cheapflights users on 9/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/212:23 pm -
1 stop8h 03m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/29![Alaska Airlines logo]()
$289
This Kiwi.com deal was found by Cheapflights users on 9/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 10/206:33 pm -
3 stops38h 33m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/30![Multiple Airlines logo]()
$565
This Kiwi.com deal was found by Cheapflights users on 9/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 10/226:33 pm -
3 stops41h 43m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/30![Multiple Airlines logo]()
$568
Find flight deals from Juneau to San Diego
Discover tips and strategies to find the most affordable flight options for your journey from Juneau (JNU) to San Diego (SAN). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated October 2, 2026.
Round-trip from | $584 (Alaska Airlines) |
|---|---|
One-way from | $289 (Alaska Airlines) |
Cheapflights Fare Finder
Customize your flight search to find flights from Juneau to San Diego that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 7,457,451 searches. Data last updated October 2, 2026.
Use the filters below to find and compare flights from Juneau to San Diego that are best for you.
Fly from
Fly to
Route
Depart
Return
Cheapest round-trip
Quickest round-trip
JuneauSan Diego
JNU Juneau Intl - SAN San Diego
JNUSAN
Juneau Intl
Wed 10/21
2:23 pm-11:26 pm
1 stop8h 03m
San Diego
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$289
JuneauSan Diego
JNU Juneau Intl - SAN San Diego
JNUSAN
Juneau Intl
Tue 10/20
6:33 pm-10:06 am
3 stops38h 33m
San Diego
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$565
JuneauSan Diego
JNU Juneau Intl - SAN San Diego
JNUSAN
Juneau Intl
Thu 10/22
6:33 pm-1:16 pm
3 stops41h 43m
San Diego
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$568
JuneauSan Diego
JNU Juneau Intl - SAN San Diego
JNUSAN
Juneau Intl
Wed 12/2
6:33 pm-1:53 pm
2 stops18h 20m
San Diego
Thu 12/3
5:38 pm-8:54 am
1 stop16h 16m
$584
JuneauSan Diego
JNU Juneau Intl - SAN San Diego
JNUSAN
Juneau Intl
Thu 10/29
2:23 pm-8:12 am
2 stops16h 49m
San Diego
Thu 11/5
10:07 am-9:28 pm
3 stops12h 21m
$716
JuneauSan Diego
JNU Juneau Intl - SAN San Diego
JNUSAN
Juneau Intl
Wed 10/14
9:43 am-11:26 pm
1 stop12h 43m
San Diego
Sun 10/18
6:15 am-9:29 pm
1 stop16h 14m
$1,056
Sorted by cheapest first
Best time to book a flight from Juneau to San Diego
Have a flexible travel schedule? Discover the best time to fly to San Diego from Juneau with our price prediction graph.
JNU-SAN
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.
Related info for your journey
Find useful and relevant information for your journey from Juneau to San Diego. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.
Traveling to a place near San Diego?
Book flights to San Diego if you plan to visit one of these locationsEl Cajon
National City
Chula Vista
San Ysidro
Poway
Coronado
La Mesa
Julian
Santee
Lemon Grove
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