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$317+ Cheap flights from Juneau to San Diego (JNU - SAN)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 8/28. Fares are subject to change and may not be available on all flights or dates of travel.
JNU — SAN
Jun 18 — Jun 251
Thu 6/18
Thu 6/25
1 adult, Economy
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Cheap flight deals from Juneau to San Diego

Cheapest flights from Juneau to San Diego
Explore the most affordable flight options available from Juneau to San Diego. Find the lowest fares from popular airlines and budget airlines, with prices last updated on May 19, 2026.

This Delta deal was found by Cheapflights users on 5/15. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Delta is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 10/157:05 am
JNU
-
SAN
1 stop6h 31m
Delta
Sun 10/187:00 am
SAN
-
JNU
1 stop12h 15m
Delta
Deal found 5/15$650
This Expedia deal was found by Cheapflights users on 5/15. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Expedia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 10/157:13 am
JNU
-
SAN
2 stops11h 29m
Alaska Airlines
Sun 10/1812:07 pm
SAN
-
JNU
2 stops10h 22m
Alaska Airlines
Deal found 5/15$720
This Expedia deal was found by Cheapflights users on 5/14. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Expedia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 7/188:48 pm
JNU
-
SAN
1 stop11h 22m
Alaska Airlines
Sat 8/16:18 am
SAN
-
JNU
2 stops16h 07m
Alaska Airlines
Deal found 5/14$725
This Alaska Airlines deal was found by Cheapflights users on 5/13. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 12/79:20 am
JNU
-
SAN
3 stops12h 36m
Alaska Airlines
Tue 12/87:05 pm
SAN
-
JNU
2 stops27h 25m
Alaska Airlines
Deal found 5/13$742

Find flight deals from Juneau to San Diego

Discover tips and strategies to find the most affordable flight options for your journey from Juneau (JNU) to San Diego (SAN). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated May 19, 2026.

Round-trip from

$650
(Delta)

One-way from

$317
(Alaska Airlines)
From Juneau Intl to San Diego
Search Deals
One-way flight from Juneau Intl to San Diego
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Cheapflights Fare Finder

 
Customize your flight search to find flights from Juneau to San Diego that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated May 19, 2026.
Use the filters below to find and compare flights from Juneau to San Diego that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip
Quickest round-trip

JuneauSan Diego

JNU - SAN

JNUSAN

Juneau Intl

Thu 10/15

7:05 am-2:36 pm

1 stop6h 31m

San Diego

Sun 10/18

7:00 am-6:15 pm

1 stop12h 15m

$650

JuneauSan Diego

JNU - SAN

JNUSAN

Juneau Intl

Thu 10/15

7:13 am-7:42 pm

2 stops11h 29m

San Diego

Sun 10/18

12:07 pm-9:29 pm

2 stops10h 22m

$720

JuneauSan Diego

JNU - SAN

JNUSAN

Juneau Intl

Sat 7/18

8:48 pm-9:10 am

1 stop11h 22m

San Diego

Sat 8/1

6:18 am-9:25 pm

2 stops16h 07m

$725
Cheapest one-way

JuneauSan Diego

JNU - SAN

JNUSAN

Juneau Intl

Mon 7/6

9:55 am-11:03 pm

1 stop12h 08m

$380
Quickest one-way

JuneauSan Diego

JNU - SAN

JNUSAN

Juneau Intl

Fri 8/28

9:45 am-10:44 pm

3 stops11h 59m

$380

Flights are sorted by cheapest round-trip flights first.

Deals found on 5/15

Sorted by cheapest first

Best time to book a flight from Juneau to San Diego

Have a flexible travel schedule? Discover the best time to fly to San Diego from Juneau with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Related info for your journey

Find useful and relevant information for your journey from Juneau to San Diego. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How long is the flight from Juneau to San Diego?

    Airlines like Delta and Alaska Airlines fly from Juneau to San Diego in about 6h 31m. The time it takes to get you to your destination can typically vary by up to 4h 58m. Juneau and San Diego are separated by a distance of 1945 mi. This flight may include one or multiple stops.

  • Can I find deals for flights from Juneau to San Diego that include hotel bookings?

    Yes. In addition to deals on Juneau to San Diego flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Juneau to San Diego?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Juneau to San Diego.

  • Can I find deals for business class flights from Juneau to San Diego?

    Yes. Cheapflights offers flight deals from Juneau to San Diego by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Traveling to a place near San Diego?

Book flights to San Diego if you plan to visit one of these locations
El Cajon
Chula Vista
National City
Coronado
Poway
La Mesa
Julian
Lemon Grove

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