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Santorini

$61+ Cheap flights from Heraklion to Thera (HER - JTR)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 6/27. Fares are subject to change and may not be available on all flights or dates of travel.
HER — JTR
Jul 16 — Jul 231
Thu 7/16
Thu 7/23
1 adult, Economy
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Cheap flight deals from Heraklion to Santorini

Cheapest flights from Heraklion to Santorini
Explore the most affordable flight options available from Heraklion to Santorini. Find the lowest fares from popular airlines and budget airlines, with prices last updated on June 16, 2026.

This Booking.com deal was found by Cheapflights users on 6/12. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 7/44:20 pm
HER
-
JTR
Nonstop0h 40m
Aegean Airlines
Tue 7/76:00 pm
JTR
-
HER
Nonstop0h 40m
Aegean Airlines
Deal found 6/12$108
This Kiwi.com deal was found by Cheapflights users on 6/12. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 7/44:20 pm
HER
-
JTR
Nonstop0h 40m
Multiple Airlines
Tue 7/710:30 pm
JTR
-
HER
1 stop23h 45m
Multiple Airlines
Deal found 6/12$137
This Booking.com deal was found by Cheapflights users on 6/14. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 6/304:35 pm
HER
-
JTR
Nonstop0h 40m
Aegean Airlines
Thu 7/25:35 pm
JTR
-
HER
Nonstop0h 45m
Aegean Airlines
Deal found 6/14$147
This Mytrip deal was found by Cheapflights users on 6/15. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 6/309:25 pm
HER
-
JTR
1 stop12h 30m
Multiple Airlines
Fri 7/312:05 am
JTR
-
HER
1 stop7h 25m
Multiple Airlines
Deal found 6/15$150
This Mytrip deal was found by Cheapflights users on 6/15. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 7/211:05 pm
HER
-
JTR
1 stop8h 40m
Multiple Airlines
Fri 7/312:05 am
JTR
-
HER
1 stop7h 55m
Multiple Airlines
Deal found 6/15$152
This Booking.com deal was found by Cheapflights users on 6/16. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 7/234:20 pm
HER
-
JTR
Nonstop0h 40m
Aegean Airlines
Sun 7/266:00 am
JTR
-
HER
1 stop4h 55m
Aegean Airlines
Deal found 6/16$158
This Booking.com deal was found by Cheapflights users on 6/15. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 6/304:35 pm
HER
-
JTR
Nonstop0h 40m
Aegean Airlines
Sat 7/45:35 pm
JTR
-
HER
Nonstop0h 40m
Aegean Airlines
Deal found 6/15$161
This Mytrip deal was found by Cheapflights users on 6/14. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 6/309:25 pm
HER
-
JTR
1 stop12h 30m
Multiple Airlines
Thu 7/25:35 pm
JTR
-
HER
Nonstop0h 45m
Multiple Airlines
Deal found 6/14$169
This Kiwi.com deal was found by Cheapflights users on 6/15. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 7/184:20 pm
HER
-
JTR
Nonstop0h 40m
Multiple Airlines
Mon 7/2010:55 am
JTR
-
HER
1 stop22h 20m
Multiple Airlines
Deal found 6/15$178

Find flight deals from Heraklion to Santorini

Discover tips and strategies to find the most affordable flight options for your journey from Heraklion (HER) to Santorini (JTR). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated June 16, 2026.

Most accurate provider

FlightHub
3 stars

Most trusted provider

FlightHub
3 stars

Round-trip from

$108
(Booking.com)

One-way from

$61
(Aegean Airlines)
Provider with most accurate pricing for Heraklion N. Kazantzakis Apt.-Thera Santorini flight deals.
Search Deals
Provider most trusted by Cheapflights users for Heraklion N. Kazantzakis Apt.-Thera Santorini flights.
Search Deals
From Heraklion N. Kazantzakis Apt. to Thera Santorini
Search Deals
One-way flight from Heraklion N. Kazantzakis Apt. to Thera Santorini
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from Heraklion to Santorini that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated June 16, 2026.
Use the filters below to find and compare flights from Heraklion to Thera that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Thu 7/23

4:20 pm-5:00 pm

Nonstop0h 40m

Thera Santorini

Sun 7/26

6:00 am-10:55 am

1 stop4h 55m

$158

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Tue 6/30

9:25 pm-9:55 am

1 stop12h 30m

Thera Santorini

Thu 7/2

5:35 pm-6:20 pm

Nonstop0h 45m

$169

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Fri 9/25

11:30 pm-12:25 am

1 stop24h 55m

Thera Santorini

Tue 9/29

5:45 pm-6:25 pm

Nonstop0h 40m

$178

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Fri 9/25

10:25 pm-7:05 am

1 stop8h 40m

Thera Santorini

Tue 9/29

11:20 pm-8:00 am

1 stop8h 40m

$192

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Tue 7/7

4:30 pm-5:15 pm

Nonstop0h 45m

Thera Santorini

Thu 7/9

5:35 pm-6:20 pm

Nonstop0h 45m

$199

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Thu 7/23

11:05 pm-7:55 am

1 stop8h 50m

Thera Santorini

Sun 7/26

6:00 am-10:55 am

1 stop4h 55m

$212
Quickest round-trip

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Tue 6/30

4:35 pm-5:15 pm

Nonstop0h 40m

Thera Santorini

Sat 7/25

5:35 pm-6:15 pm

Nonstop0h 40m

$225

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Thu 7/2

9:55 pm-12:25 am

1 stop2h 30m

Thera Santorini

Sat 7/4

5:35 pm-6:15 pm

Nonstop0h 40m

$241
Cheapest one-way

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Mon 10/12

10:45 pm-10:45 pm

1 stop24h 00m

$83

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Sun 8/30

11:20 pm-11:25 pm

1 stop24h 05m

$90

Flights are sorted by cheapest round-trip flights first.

Deals found on 6/11

Showing 1-10 of 14 resultsSorted by cheapest first
1
2
  • Most accurate provider: When it comes to deals on Heraklion-Thera flights, users find the pricing of FlightHub to be most consistent on Cheapflights vs. FlightHub Users can find the same prices on Heraklion-Thera flight deals on Cheapflights vs. FlightHub >95% of the time. Price accuracy is based on data collected from Heraklion-Thera flight searches over the past month and is updated monthly.
  • Most trusted provider: When it comes to deals on Heraklion-Thera flights, Cheapflights users trust FlightHub the most. FlightHub has received a user feedback score of 3 out of 3 stars (3 being the best), meaning they have been trusted the most by Cheapflights users looking for Heraklion-Thera flight deals. Provider user feedback score is based on Cheapflights searches over the past month and is updated monthly.

Best time to book a flight from Heraklion to Santorini

Have a flexible travel schedule? Discover the best time to fly to Santorini from Heraklion with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Heraklion to Thera

What is the cheapest time of day to fly from HER to JTR?

Find hourly flight availability from Heraklion to Santorini. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated June 16, 2026.

Regardless of the time of day you decide to fly, the ticket price will remain around the same. Book flights from Heraklion to Thera as you normally would.

Related info for your journey

Find useful and relevant information for your journey from Heraklion to Santorini. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How long is the flight from Heraklion to Thera?

    Departing from Heraklion to Thera will take you 40m. The distance between Heraklion and Thera is about 75 mi. Most flights are nonstop.

  • Can I find deals for flights from Heraklion to Santorini that include hotel bookings?

    Yes. In addition to deals on Heraklion to Santorini flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Heraklion to Santorini?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Heraklion to Santorini.

  • Can I find deals for business class flights from Heraklion to Santorini?

    Yes. Cheapflights offers flight deals from Heraklion to Santorini by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Traveling to a place near Thera?

Book flights to Thera if you plan to visit one of these locations
Oia
Kamari
Imerovigli

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