$59+ Cheap flights from Heraklion to Thera (HER - JTR)
This is the cheapest round-trip flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 1/27. Fares are subject to change and may not be available on all flights or dates of travel.
HER — JTR
Oct 13 — Oct 201
Round-trip
1 adult, Economy
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Find cheap flights from Heraklion to Santorini with Cheapflights
1. Tell us where you want to go
Enter your travel information like dates, passengers, trip type (one-way or round trip), and preferred cabin class then click “Find deals”2. Select your favorite providers
We find the providers serving your travel needs. Choose up to four travel providers to compare side-by-side for flights, hotels, or car rentals.3. Compare prices and book
Review each provider’s pricing and select the best option for you! Book through your favorite provider’s website for a seamless experience.Cheap flight deals from Heraklion to Santorini
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Cheapest flights from Heraklion to SantoriniExplore the most affordable flight options available from Heraklion to Santorini. Find the lowest fares from popular airlines and budget airlines, with prices last updated on September 13, 2026.
Explore the most affordable flight options available from Heraklion to Santorini. Find the lowest fares from popular airlines and budget airlines, with prices last updated on September 13, 2026.
This FlightHub deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 9/116:00 am -
1 stop2h 40m
Fri 9/116:40 pm -
1 stop5h 55m
Deal found 9/10![Aegean Airlines logo]()
$160
This Mytrip deal was found by Cheapflights users on 9/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 10/1711:30 pm -
1 stop8h 15m
Mon 10/197:55 pm -
1 stop12h 05m
Deal found 9/8![Multiple Airlines logo]()
$164
This Booking.com deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 10/319:45 pm -
1 stop16h 40m
Mon 11/29:35 pm -
1 stop14h 40m
Deal found 9/10![Sky Express logo]()
$192
This Booking.com deal was found by Cheapflights users on 9/13. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/74:15 pm -
1 stop4h 55m
Mon 11/96:40 pm -
1 stop13h 20m
Deal found 9/13![Sky Express logo]()
$207
This Aegean Airlines deal was found by Cheapflights users on 9/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 10/179:55 pm -
1 stop2h 30m
Mon 10/196:40 pm -
1 stop5h 55m
Deal found 9/8![Aegean Airlines logo]()
$240
This Mytrip deal was found by Cheapflights users on 9/13. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/75:00 pm -
2 stops5h 15m
Mon 11/99:35 pm -
1 stop10h 25m
Deal found 9/13![Multiple Airlines logo]()
$335
This Kiwi.com deal was found by Cheapflights users on 9/13. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 9/148:10 am -
1 stop9h 15m
Mon 9/149:45 pm -
1 stop10h 15m
Deal found 9/13![Multiple Airlines logo]()
$352
This Aegean Airlines deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 11/66:25 pm -
1 stop13h 10m
Sun 11/86:00 am -
1 stop2h 45m
Deal found 9/10![Aegean Airlines logo]()
$364
This Aegean Airlines deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 11/88:10 am -
1 stop4h 00m
Sun 11/82:50 pm -
1 stop2h 55m
Deal found 9/10![Aegean Airlines logo]()
$437
This Aegean Airlines deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/76:00 am -
1 stop5h 15m
Sat 11/72:50 pm -
1 stop6h 20m
Deal found 9/10![Aegean Airlines logo]()
$460
Best flights from Heraklion to SantoriniDiscover carefully curated flight deals from Heraklion to Santorini that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated September 13, 2026.
Discover carefully curated flight deals from Heraklion to Santorini that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated September 13, 2026.
This Mytrip deal was found by Cheapflights users on 9/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 10/1711:30 pm -
1 stop8h 15m
Mon 10/197:55 pm -
1 stop12h 05m
Deal found 9/8![Multiple Airlines logo]()
$164
This Booking.com deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 10/319:45 pm -
1 stop16h 40m
Mon 11/29:35 pm -
1 stop14h 40m
Deal found 9/10![Sky Express logo]()
$192
This Aegean Airlines deal was found by Cheapflights users on 9/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 10/179:55 pm -
1 stop2h 30m
Mon 10/196:40 pm -
1 stop5h 55m
Deal found 9/8![Aegean Airlines logo]()
$240
This Mytrip deal was found by Cheapflights users on 9/13. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/75:00 pm -
2 stops5h 15m
Mon 11/99:35 pm -
1 stop10h 25m
Deal found 9/13![Multiple Airlines logo]()
$335
This Aegean Airlines deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 11/66:00 am -
1 stop5h 15m
Sat 11/76:00 am -
1 stop2h 45m
Deal found 9/10![Aegean Airlines logo]()
$364
This Aegean Airlines deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 11/66:25 pm -
1 stop13h 10m
Sun 11/86:00 am -
1 stop2h 45m
Deal found 9/10![Aegean Airlines logo]()
$364
This Aegean Airlines deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 11/88:10 am -
1 stop4h 00m
Sun 11/82:50 pm -
1 stop2h 55m
Deal found 9/10![Aegean Airlines logo]()
$437
This Priceline deal was found by Cheapflights users on 9/13. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Priceline is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/77:00 am -
2 stops25h 35m
Mon 11/96:40 pm -
2 stops24h 45m
Deal found 9/13![Sky Express logo]()
$545
This Aegean Airlines deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/76:00 am -
1 stop5h 15m
Sat 11/72:50 pm -
1 stop6h 20m
Deal found 9/10![Aegean Airlines logo]()
$460
Last-minute flights from Heraklion to SantoriniDiscover last-minute flight deals from Heraklion to Santorini. Data last updated September 13, 2026 and is based on user searches.
Discover last-minute flight deals from Heraklion to Santorini. Data last updated September 13, 2026 and is based on user searches.
This FlightHub deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 9/116:00 am -
1 stop2h 40m
Fri 9/116:40 pm -
1 stop5h 55m
Deal found 9/10![Aegean Airlines logo]()
$160
This Mytrip deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 9/116:00 am -
2 stops5h 50m
Fri 9/116:40 pm -
1 stop5h 55m
Deal found 9/10![Multiple Airlines logo]()
$546
This Kiwi.com deal was found by Cheapflights users on 9/13. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 9/148:10 am -
1 stop9h 15m
Mon 9/149:45 pm -
1 stop10h 15m
Deal found 9/13![Multiple Airlines logo]()
$352
This Mytrip deal was found by Cheapflights users on 9/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 10/1711:30 pm -
1 stop8h 15m
Mon 10/197:55 pm -
1 stop12h 05m
Deal found 9/8![Multiple Airlines logo]()
$164
This Aegean Airlines deal was found by Cheapflights users on 9/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 10/179:55 pm -
1 stop2h 30m
Mon 10/196:40 pm -
1 stop5h 55m
Deal found 9/8![Aegean Airlines logo]()
$240
This Booking.com deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 10/319:45 pm -
1 stop16h 40m
Mon 11/29:35 pm -
1 stop14h 40m
Deal found 9/10![Sky Express logo]()
$192
One-way flights from Heraklion to SantoriniSearch for one-way flight options from Heraklion to Santorini. Find affordable one-way fares based on user searches. Data last updated September 13, 2026.
Search for one-way flight options from Heraklion to Santorini. Find affordable one-way fares based on user searches. Data last updated September 13, 2026.
This Booking.com deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 1/276:50 pm -
1 stop2h 20m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/10![Sky Express logo]()
$59
This Mytrip deal was found by Cheapflights users on 9/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 10/1210:45 pm -
1 stop9h 00m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/8![Multiple Airlines logo]()
$80
This Kiwi.com deal was found by Cheapflights users on 9/12. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 10/88:10 am -
1 stop14h 45m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/12![Multiple Airlines logo]()
$81
This Booking.com deal was found by Cheapflights users on 9/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 1/309:45 pm -
1 stop16h 40m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/8![Sky Express logo]()
$85
This Kiwi.com deal was found by Cheapflights users on 9/12. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 10/910:25 pm -
1 stop24h 50m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/12![Multiple Airlines logo]()
$89
This Mytrip deal was found by Cheapflights users on 9/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 10/11:00 pm -
1 stop9h 55m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/8![Multiple Airlines logo]()
$90
This Kiwi.com deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 9/1811:30 pm -
1 stop23h 45m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/10![Multiple Airlines logo]()
$96
This Aegean Airlines deal was found by Cheapflights users on 9/11. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 10/48:10 am -
1 stop3h 40m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/11![Aegean Airlines logo]()
$129
This Aegean Airlines deal was found by Cheapflights users on 9/11. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 10/16:00 am -
1 stop15h 20m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/11![Aegean Airlines logo]()
$171
Find flight deals from Heraklion to Santorini
Discover tips and strategies to find the most affordable flight options for your journey from Heraklion (HER) to Santorini (JTR). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated September 13, 2026.
Most accurate provider | FlightHub 3 stars |
|---|---|
Most trusted provider | FlightHub 3 stars |
Round-trip from | $164 (Mytrip) |
One-way from | $59 (Booking.com) |
Good one-way deal | $111 or less |
Cheapflights Fare Finder
Customize your flight search to find flights from Heraklion to Santorini that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 7,457,451 searches. Data last updated September 13, 2026.
Use the filters below to find and compare flights from Heraklion to Thera that are best for you.
Fly from
Fly to
Route
Depart
Return
Cheapest round-trip
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Fri 10/9
10:25 pm-11:15 pm
1 stop24h 50m
Thera Santorini
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$89
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Thu 10/1
1:00 pm-10:55 pm
1 stop9h 55m
Thera Santorini
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$90
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Fri 9/18
11:30 pm-11:15 pm
1 stop23h 45m
Thera Santorini
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$96
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Sun 10/4
8:10 am-11:50 am
1 stop3h 40m
Thera Santorini
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$129
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Sat 10/17
11:30 pm-7:45 am
1 stop8h 15m
Thera Santorini
Mon 10/19
7:55 pm-8:00 am
1 stop12h 05m
$164
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Sat 10/3
6:25 pm-12:25 am
1 stop6h 00m
Thera Santorini
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$171
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Thu 10/8
7:30 pm-12:25 am
2 stops4h 55m
Thera Santorini
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$173
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Thu 10/1
4:20 pm-5:00 pm
Nonstop0h 40m
Thera Santorini
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$177
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Sat 10/31
9:45 pm-2:25 pm
1 stop16h 40m
Thera Santorini
Mon 11/2
9:35 pm-12:15 pm
1 stop14h 40m
$192
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Sat 10/17
9:55 pm-12:25 am
1 stop2h 30m
Thera Santorini
Mon 10/19
6:40 pm-12:35 am
1 stop5h 55m
$240
Showing 1-10 of 18 resultsSorted by cheapest first
- Most accurate provider: When it comes to deals on Heraklion-Thera flights, users find the pricing of FlightHub to be most consistent on Cheapflights vs. FlightHub Users can find the same prices on Heraklion-Thera flight deals on Cheapflights vs. FlightHub >95% of the time. Price accuracy is based on data collected from Heraklion-Thera flight searches over the past month and is updated monthly.
- Most trusted provider: When it comes to deals on Heraklion-Thera flights, Cheapflights users trust FlightHub the most. FlightHub has received a user feedback score of 3 out of 3 stars (3 being the best), meaning they have been trusted the most by Cheapflights users looking for Heraklion-Thera flight deals. Provider user feedback score is based on Cheapflights searches over the past month and is updated monthly.
Best time to book a flight from Heraklion to Santorini
Have a flexible travel schedule? Discover the best time to fly to Santorini from Heraklion with our price prediction graph.
HER-JTR
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.
Cheapflights Insights
Everything you need to know about your flight from Heraklion to Thera
Prices
Delays
How often are flights from Heraklion to Thera delayed?
About 9% of weekly flights between Heraklion and Thera have experienced delays in the past year, with the average delay time being 63 minutes.
What is the most punctual flight time for Heraklion to Thera flights?
Historically, flights departing in the morning are less likely to be delayed, whereas flights leaving in the early afternoon tend to experience delays more often.
What day of the week experiences the fewest flight delays on this route?
Thursday tends to have the lowest number of delays on this route, whereas Saturday has historically faced a higher average of delays compared to other days of the week.
Which airline has the best punctuality record on Heraklion to Thera flights?
Over the last year, Olympic Air have had the lowest number of delays on this route, with just 9% of flights being delayed.
Related info for your journey
Find useful and relevant information for your journey from Heraklion to Santorini. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.
Traveling to a place near Thera?
Book flights to Thera if you plan to visit one of these locationsOia
Imerovigli
Kamari
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