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Santorini

$75+ Cheap flights from Heraklion to Thera (HER - JTR)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 9/26. Fares are subject to change and may not be available on all flights or dates of travel.
HER — JTR
Aug 31 — Sep 71
Mon 8/31
Mon 9/7
1 adult, Economy
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Cheap flight deals from Heraklion to Santorini

Cheapest flights from Heraklion to Santorini
Explore the most affordable flight options available from Heraklion to Santorini. Find the lowest fares from popular airlines and budget airlines, with prices last updated on August 1, 2026.

This Mytrip deal was found by Cheapflights users on 7/28. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/1410:25 pm
HER
-
JTR
1 stop9h 30m
Multiple Airlines
Fri 10/2312:05 am
JTR
-
HER
1 stop7h 55m
Multiple Airlines
Deal found 7/28$149
This Booking.com deal was found by Cheapflights users on 7/31. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 8/274:20 pm
HER
-
JTR
Nonstop0h 40m
Multiple Airlines
Sun 8/308:30 am
JTR
-
HER
1 stop15h 50m
Multiple Airlines
Deal found 7/31$165
This Aegean Airlines deal was found by Cheapflights users on 7/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 8/274:20 pm
HER
-
JTR
Nonstop0h 40m
Aegean Airlines
Sun 8/308:25 am
JTR
-
HER
1 stop3h 55m
Aegean Airlines
Deal found 7/29$176
This Aegean Airlines deal was found by Cheapflights users on 7/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 8/14:20 pm
HER
-
JTR
Nonstop0h 40m
Aegean Airlines
Tue 8/46:00 pm
JTR
-
HER
Nonstop0h 40m
Aegean Airlines
Deal found 7/30$191
This FlightHub deal was found by Cheapflights users on 7/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 9/186:00 am
HER
-
JTR
1 stop2h 40m
Aegean Airlines
Fri 9/1810:00 pm
JTR
-
HER
1 stop2h 35m
Aegean Airlines
Deal found 7/30$204
This Aegean Airlines deal was found by Cheapflights users on 7/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 8/204:20 pm
HER
-
JTR
Nonstop0h 40m
Aegean Airlines
Tue 8/256:00 pm
JTR
-
HER
Nonstop0h 40m
Aegean Airlines
Deal found 7/30$222
This Aegean Airlines deal was found by Cheapflights users on 7/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 8/294:20 pm
HER
-
JTR
Nonstop0h 40m
Aegean Airlines
Tue 9/15:45 pm
JTR
-
HER
Nonstop0h 40m
Aegean Airlines
Deal found 7/29$238

Find flight deals from Heraklion to Santorini

Discover tips and strategies to find the most affordable flight options for your journey from Heraklion (HER) to Santorini (JTR). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated August 1, 2026.

Most accurate provider

FlightHub
3 stars

Most trusted provider

FlightHub
3 stars

Round-trip from

$149
(Mytrip)

One-way from

$75
(Mytrip)
Provider with most accurate pricing for Heraklion N. Kazantzakis Apt.-Thera Santorini flight deals.
Search Deals
Provider most trusted by Cheapflights users for Heraklion N. Kazantzakis Apt.-Thera Santorini flights.
Search Deals
From Heraklion N. Kazantzakis Apt. to Thera Santorini
Search Deals
One-way flight from Heraklion N. Kazantzakis Apt. to Thera Santorini
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from Heraklion to Santorini that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated August 1, 2026.
Use the filters below to find and compare flights from Heraklion to Thera that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Wed 10/14

10:25 pm-7:55 am

1 stop9h 30m

Thera Santorini

Fri 10/23

12:05 am-8:00 am

1 stop7h 55m

$149

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Thu 8/27

4:20 pm-5:00 pm

Nonstop0h 40m

Thera Santorini

Sun 8/30

8:25 am-12:20 pm

1 stop3h 55m

$176
Quickest round-trip

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Sat 8/29

4:20 pm-5:00 pm

Nonstop0h 40m

Thera Santorini

Tue 9/1

5:45 pm-6:25 pm

Nonstop0h 40m

$238

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Tue 8/18

11:35 am-3:45 pm

1 stop4h 10m

Thera Santorini

Sat 8/22

6:00 am-10:55 am

1 stop4h 55m

$277

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Thu 8/27

4:20 pm-5:00 pm

Nonstop0h 40m

Thera Santorini

Mon 8/31

6:00 am-9:15 pm

1 stop15h 15m

$278

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Tue 9/29

10:50 pm-7:55 am

1 stop9h 05m

Thera Santorini

Wed 9/30

6:15 pm-9:45 pm

1 stop3h 30m

$280
Cheapest one-way
Quickest one-way

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Sat 9/26

4:20 pm-5:00 pm

Nonstop0h 40m

$75

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Fri 9/18

11:30 pm-7:05 am

1 stop7h 35m

$79

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Fri 11/13

10:25 pm-2:25 pm

1 stop16h 00m

$93

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Tue 10/6

11:30 pm-7:55 am

1 stop8h 25m

$93

Flights are sorted by cheapest round-trip flights first.

Deals found on 8/1

Showing 1-10 of 14 resultsSorted by cheapest first
1
2
  • Most accurate provider: When it comes to deals on Heraklion-Thera flights, users find the pricing of FlightHub to be most consistent on Cheapflights vs. FlightHub Users can find the same prices on Heraklion-Thera flight deals on Cheapflights vs. FlightHub >95% of the time. Price accuracy is based on data collected from Heraklion-Thera flight searches over the past month and is updated monthly.
  • Most trusted provider: When it comes to deals on Heraklion-Thera flights, Cheapflights users trust FlightHub the most. FlightHub has received a user feedback score of 3 out of 3 stars (3 being the best), meaning they have been trusted the most by Cheapflights users looking for Heraklion-Thera flight deals. Provider user feedback score is based on Cheapflights searches over the past month and is updated monthly.

Best time to book a flight from Heraklion to Santorini

Have a flexible travel schedule? Discover the best time to fly to Santorini from Heraklion with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Heraklion to Thera

What is the cheapest time of day to fly from HER to JTR?

Find hourly flight availability from Heraklion to Santorini. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated August 1, 2026.

Regardless of the time of day you decide to fly, the ticket price will remain around the same. Book flights from Heraklion to Thera as you normally would.

Related info for your journey

Find useful and relevant information for your journey from Heraklion to Santorini. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How long is the flight from Heraklion to Thera?

    Departing from Heraklion to Thera will take you 40m. The distance between Heraklion and Thera is about 75 mi. Most flights are nonstop.

  • Can I find deals for flights from Heraklion to Santorini that include hotel bookings?

    Yes. In addition to deals on Heraklion to Santorini flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Heraklion to Santorini?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Heraklion to Santorini.

  • Can I find deals for business class flights from Heraklion to Santorini?

    Yes. Cheapflights offers flight deals from Heraklion to Santorini by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Traveling to a place near Thera?

Book flights to Thera if you plan to visit one of these locations
Oia
Imerovigli
Kamari

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