$91+ Cheap flights from Heraklion to Thera (HER - JTR)
This is the cheapest round-trip flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 12/16. Fares are subject to change and may not be available on all flights or dates of travel.
HER — JTR
Dec 2 — Dec 91
Round-trip
1 adult, Economy
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Find cheap flights from Heraklion to Santorini with Cheapflights
1. Tell us where you want to go
Enter your travel information like dates, passengers, trip type (one-way or round trip), and preferred cabin class then click “Find deals”2. Select your favorite providers
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Review each provider’s pricing and select the best option for you! Book through your favorite provider’s website for a seamless experience.Cheap flight deals from Heraklion to Santorini
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Cheapest flights from Heraklion to SantoriniExplore the most affordable flight options available from Heraklion to Santorini. Find the lowest fares from popular airlines and budget airlines, with prices last updated on November 2, 2026.
Explore the most affordable flight options available from Heraklion to Santorini. Find the lowest fares from popular airlines and budget airlines, with prices last updated on November 2, 2026.
This Aegean Airlines deal was found by Cheapflights users on 10/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/215:10 pm -
1 stop5h 05m
Sun 11/226:00 am -
1 stop2h 45m
Deal found 10/30![Aegean Airlines logo]()
$167
This Mytrip deal was found by Cheapflights users on 11/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/289:45 pm -
1 stop9h 50m
Sun 11/291:15 pm -
1 stop5h 00m
Deal found 11/2![Multiple Airlines logo]()
$189
This Priceline deal was found by Cheapflights users on 11/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Priceline is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/287:00 am -
2 stops5h 45m
Sun 11/296:40 pm -
2 stops24h 45m
Deal found 11/2![Sky Express logo]()
$540
Best flights from Heraklion to SantoriniDiscover carefully curated flight deals from Heraklion to Santorini that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated November 2, 2026.
Discover carefully curated flight deals from Heraklion to Santorini that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated November 2, 2026.
This Aegean Airlines deal was found by Cheapflights users on 10/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/215:10 pm -
1 stop5h 05m
Sun 11/226:00 am -
1 stop2h 45m
Deal found 10/30![Aegean Airlines logo]()
$167
This Mytrip deal was found by Cheapflights users on 11/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/289:40 am -
2 stops8h 30m
Sun 11/298:10 am -
1 stop6h 50m
Deal found 11/2![Multiple Airlines logo]()
$308
This Sky Express deal was found by Cheapflights users on 11/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Sky Express is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 4/38:40 am -
1 stop2h 15m
Tue 4/68:30 am -
1 stop23h 30m
Deal found 11/1![Sky Express logo]()
$333
This Priceline deal was found by Cheapflights users on 11/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Priceline is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/287:00 am -
2 stops5h 45m
Sun 11/296:40 pm -
2 stops24h 45m
Deal found 11/2![Sky Express logo]()
$540
Last-minute flights from Heraklion to SantoriniDiscover last-minute flight deals from Heraklion to Santorini. Data last updated November 2, 2026 and is based on user searches.
Discover last-minute flight deals from Heraklion to Santorini. Data last updated November 2, 2026 and is based on user searches.
This Aegean Airlines deal was found by Cheapflights users on 10/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/215:10 pm -
1 stop5h 05m
Sun 11/226:00 am -
1 stop2h 45m
Deal found 10/30![Aegean Airlines logo]()
$167
This Mytrip deal was found by Cheapflights users on 11/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/289:45 pm -
1 stop9h 50m
Sun 11/291:15 pm -
1 stop5h 00m
Deal found 11/2![Multiple Airlines logo]()
$189
This Priceline deal was found by Cheapflights users on 11/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Priceline is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/287:00 am -
2 stops5h 45m
Sun 11/296:40 pm -
2 stops24h 45m
Deal found 11/2![Sky Express logo]()
$540
One-way flights from Heraklion to SantoriniSearch for one-way flight options from Heraklion to Santorini. Find affordable one-way fares based on user searches. Data last updated November 2, 2026.
Search for one-way flight options from Heraklion to Santorini. Find affordable one-way fares based on user searches. Data last updated November 2, 2026.
This Kiwi.com deal was found by Cheapflights users on 10/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 12/166:50 pm -
1 stop2h 20m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 10/30![Sky Express logo]()
$91
This Kiwi.com deal was found by Cheapflights users on 10/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 12/138:40 am -
1 stop9h 30m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 10/30![Sky Express logo]()
$92
This Kiwi.com deal was found by Cheapflights users on 10/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 12/146:50 pm -
1 stop13h 45m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 10/30![Sky Express logo]()
$99
This Kiwi.com deal was found by Cheapflights users on 10/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 12/178:10 am -
1 stop3h 05m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 10/30![Aegean Airlines logo]()
$104
This Booking.com deal was found by Cheapflights users on 10/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 12/166:00 am -
1 stop6h 45m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 10/30![Aegean Airlines logo]()
$118
This Kiwi.com deal was found by Cheapflights users on 10/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 12/186:50 pm -
1 stop2h 20m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 10/30![Sky Express logo]()
$125
This FlightHub deal was found by Cheapflights users on 10/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 12/158:40 am -
1 stop12h 30m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 10/30![Sky Express logo]()
$139
This Kiwi.com deal was found by Cheapflights users on 10/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 12/195:10 pm -
1 stop4h 00m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 10/30![Multiple Airlines logo]()
$142
This FlightHub deal was found by Cheapflights users on 10/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 12/178:40 am -
1 stop12h 30m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 10/30![Sky Express logo]()
$163
This Mytrip deal was found by Cheapflights users on 10/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 12/167:10 am -
2 stops7h 15m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 10/30![Multiple Airlines logo]()
$189
Find flight deals from Heraklion to Santorini
Discover tips and strategies to find the most affordable flight options for your journey from Heraklion (HER) to Santorini (JTR). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated November 2, 2026.
Most accurate provider | FlightHub 3 stars |
|---|---|
Most trusted provider | FlightHub 3 stars |
Round-trip from | $167 (Aegean Airlines) |
One-way from | $91 (Kiwi.com) |
Cheapflights Fare Finder
Customize your flight search to find flights from Heraklion to Santorini that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 7,457,451 searches. Data last updated November 2, 2026.
Use the filters below to find and compare flights from Heraklion to Thera that are best for you.
Fly from
Fly to
Route
Depart
Return
Cheapest round-trip
Quickest round-trip
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Wed 12/16
6:50 pm-9:10 pm
1 stop2h 20m
Thera Santorini
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$91
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Fri 12/18
6:50 pm-9:10 pm
1 stop2h 20m
Thera Santorini
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$125
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Sat 12/19
5:10 pm-9:10 pm
1 stop4h 00m
Thera Santorini
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$142
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Sat 11/21
5:10 pm-10:15 pm
1 stop5h 05m
Thera Santorini
Sun 11/22
6:00 am-8:45 am
1 stop2h 45m
$167
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Tue 12/15
7:00 am-2:25 pm
2 stops7h 25m
Thera Santorini
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$256
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Sat 11/28
9:40 am-6:10 pm
2 stops8h 30m
Thera Santorini
Sun 11/29
8:10 am-3:00 pm
1 stop6h 50m
$308
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Wed 11/18
7:30 pm-6:00 pm
2 stops22h 30m
Thera Santorini
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$333
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Sat 4/3
8:40 am-10:55 am
1 stop2h 15m
Thera Santorini
Tue 4/6
8:30 am-8:00 am
1 stop23h 30m
$333
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Sun 11/15
7:30 pm-10:15 pm
2 stops26h 45m
Thera Santorini
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$375
HeraklionThera
HER Heraklion N. Kazantzakis Apt. - JTR Thera Santorini
HERJTR
Heraklion N. Kazantzakis Apt.
Fri 12/18
7:30 pm-11:15 am
2 stops15h 45m
Thera Santorini
Wed 12/31
12:00 am-12:00 am
Nonstop0h 00m
$452
Showing 1-10 of 12 resultsSorted by cheapest first
Compare providers for flights from Heraklion to Santorini
Provider information is updated monthly. Please note that these providers often have deals for this flight, but the availability may vary on a day-by-day basis on Cheapflights.
Use the table below to compare price accuracy, trust ratings, and cancellation policies for each provider offering flight deals from Heraklion to Santorini in November.
| Provider | Price Accuracy | Trust Score* |
|---|---|---|
| Price Accuracy3 stars | Trust Score*3 stars | |
| Price Accuracy2 stars | Trust Score*3 stars |
- Most accurate provider: When it comes to deals on Heraklion-Thera flights, users find the pricing of FlightHub to be most consistent on Cheapflights vs. FlightHub Users can find the same prices on Heraklion-Thera flight deals on Cheapflights vs. FlightHub >95% of the time. Price accuracy is based on data collected from Heraklion-Thera flight searches over the past month and is updated monthly.
- Most trusted provider: When it comes to deals on Heraklion-Thera flights, Cheapflights users trust FlightHub the most. FlightHub has received a user feedback score of 3 out of 3 stars (3 being the best), meaning they have been trusted the most by Cheapflights users looking for Heraklion-Thera flight deals. Provider user feedback score is based on Cheapflights searches over the past month and is updated monthly.
Best time to book a flight from Heraklion to Santorini
Have a flexible travel schedule? Discover the best time to fly to Santorini from Heraklion with our price prediction graph.
HER-JTR
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.
Cheapflights Insights
Everything you need to know about your flight from Heraklion to Thera
How often are flights from Heraklion to Thera delayed?
About 8% of weekly flights between Heraklion and Thera have experienced delays in the past year, with the average delay time being 63 minutes.
What is the most punctual flight time for Heraklion to Thera flights?
Historically, flights departing in the morning are less likely to be delayed, whereas flights leaving in the early afternoon tend to experience delays more often.
What day of the week experiences the fewest flight delays on this route?
Thursday tends to have the lowest number of delays on this route, whereas Saturday has historically faced a higher average of delays compared to other days of the week.
Which airline has the best punctuality record on Heraklion to Thera flights?
Over the last year, Olympic Air have had the lowest number of delays on this route, with just 8% of flights being delayed.
Related info for your journey
Find useful and relevant information for your journey from Heraklion to Santorini. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.
Traveling to a place near Thera?
Book flights to Thera if you plan to visit one of these locationsOia
Imerovigli
Kamari
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