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$127+ Cheap flights from San Juan to San Diego (SAN)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 6/25. Fares are subject to change and may not be available on all flights or dates of travel.
SJU — SAN
Jun 17 — Jun 241
Tue 6/17
Tue 6/24
1 adult, Economy
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Cheapflights Tip: The best prices from San Juan to San Diego are usually found in August or September, booked 17 days in advance, depart on a Thursday or Tuesday and return on a Saturday

Cheap flight deals from San Juan to San Diego

Discover tips and strategies to find the most affordable flight options for your journey from San Juan (PR1) to San Diego (SAN). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated June 12, 2025.

Round-trip from

$296
(Booking.com)

One-way from

$127
(FlightHub)

Popular in

February

Cheapest in

August

Average price

$514
From San Juan to San Diego
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One-way flight from San Juan to San Diego
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Highest demand for flights based on searches. 0% potential increase in price ($5 potential increase over avg. RT price).
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Cheapest flight prices on average. 1% potential price decrease ($7 potential savings vs. average RT price).
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Average for round-trip flights in June 2025
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Find flight deals from San Juan to San Diego

Cheapest flights from San Juan to San Diego
Explore the most affordable flight options available from San Juan to San Diego. Find the lowest fares from popular airlines and budget airlines, with prices last updated on June 12, 2025.

This Booking.com deal was found by Cheapflights users on 6/9. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 6/251:02 pmSJU - SAN
2 stops13h 27mSpirit Airlines
Sun 6/297:31 pmSAN - SJU
2 stops13h 26mSpirit Airlines
Deal found 6/9$296
This American Airlines deal was found by Cheapflights users on 6/12. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure American Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/156:30 amSJU - SAN
1 stop18h 33mAmerican Airlines
Mon 10/207:55 pmSAN - SJU
2 stops11h 55mAmerican Airlines
Deal found 6/12$351
This JetBlue deal was found by Cheapflights users on 6/11. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure JetBlue is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 11/121:59 amSJU - SAN
1 stop11h 16mJetBlue
Mon 11/1710:25 amSAN - SJU
1 stop10h 12mJetBlue
Deal found 6/11$362
This United Airlines deal was found by Cheapflights users on 6/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 6/301:10 amSJU - SAN
1 stop11h 31mUnited Airlines
Sat 7/59:40 pmSAN - SJU
1 stop11h 17mUnited Airlines
Deal found 6/10$372
This Frontier deal was found by Cheapflights users on 6/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Frontier is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 7/168:15 amSJU - SAN
2 stops17h 47mFrontier
Fri 7/251:12 pmSAN - SJU
2 stops20h 16mFrontier
Deal found 6/10$385
This CheapOair deal was found by Cheapflights users on 6/12. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure CheapOair is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 8/61:37 amSJU - SAN
1 stop12h 58mMultiple Airlines
Fri 8/155:35 pmSAN - SJU
1 stop18h 41mMultiple Airlines
Deal found 6/12$430
This Delta deal was found by Cheapflights users on 6/12. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Delta is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 11/183:30 pmSJU - SAN
2 stops12h 15mDelta
Tue 12/26:20 amSAN - SJU
2 stops13h 30mDelta
Deal found 6/12$451
This Southwest deal was found by Cheapflights users on 6/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Southwest is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 7/106:30 amSJU - SAN
1 stop9h 25mSouthwest
Wed 7/166:20 amSAN - SJU
1 stop13h 05mSouthwest
Deal found 6/10$485

Cheapflights Fare Finder

Customize your flight search to find flights from San Juan to San Diego that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated June 12, 2025.
Use the filters below to find and compare flights from San Juan to San Diego that are best for you.

Fly from

San Juan

Fly to

San Diego

Route

Depart

Return

Price

San JuanSan Diego

SJU - SAN

SJUSAN

San Juan Luis Munoz Marin Intl

Wed 6/25

1:02 pm-11:29 pm

2 stops13h 27m

San Diego

Sun 6/29

7:31 pm-11:57 am

2 stops13h 26m

$296

San JuanSan Diego

SJU - SAN

SJUSAN

San Juan Luis Munoz Marin Intl

Wed 10/15

6:30 am-10:03 pm

1 stop18h 33m

San Diego

Mon 10/20

7:55 pm-10:50 am

2 stops11h 55m

$351

San JuanSan Diego

SJU - SAN

SJUSAN

San Juan Luis Munoz Marin Intl

Wed 11/12

1:59 am-9:15 am

1 stop11h 16m

San Diego

Mon 11/17

10:25 am-12:37 am

1 stop10h 12m

$362

San JuanSan Diego

SJU - SAN

SJUSAN

San Juan Luis Munoz Marin Intl

Mon 6/30

1:10 am-9:41 am

1 stop11h 31m

San Diego

Sat 7/5

9:40 pm-11:57 am

1 stop11h 17m

$372

San JuanSan Diego

SJU - SAN

SJUSAN

San Juan Luis Munoz Marin Intl

Wed 7/16

8:15 am-11:02 pm

2 stops17h 47m

San Diego

Fri 7/25

1:12 pm-12:28 pm

2 stops20h 16m

$385

San JuanSan Diego

SJU - SAN

SJUSAN

San Juan Luis Munoz Marin Intl

Wed 8/6

1:37 am-11:35 am

1 stop12h 58m

San Diego

Fri 8/15

5:35 pm-3:16 pm

1 stop18h 41m

$430

San JuanSan Diego

SJU - SAN

SJUSAN

San Juan Luis Munoz Marin Intl

Tue 11/18

3:30 pm-11:45 pm

2 stops12h 15m

San Diego

Tue 12/2

6:20 am-11:50 pm

2 stops13h 30m

$451

San JuanSan Diego

SJU - SAN

SJUSAN

San Juan Luis Munoz Marin Intl

Thu 7/10

6:30 am-12:55 pm

1 stop9h 25m

San Diego

Wed 7/16

6:20 am-10:25 pm

1 stop13h 05m

$485

San JuanSan Diego

SJU - SAN

SJUSAN

San Juan Luis Munoz Marin Intl

Wed 6/25

1:02 pm-11:29 pm

2 stops13h 27m

$127

San JuanSan Diego

SJU - SAN

SJUSAN

San Juan Luis Munoz Marin Intl

Thu 9/18

3:05 pm-8:24 am

1 stop20h 19m

$176

Flights are sorted by cheapest round-trip flights first.

Deals found on 6/11

Showing 1-10 of 18 results
1
2

Best time to book a flight from San Juan to San Diego

Have a flexible travel schedule? Discover the best time to fly to San Diego from San Juan with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from San Juan to San Diego

How far ahead should I book a flight from San Juan to San Diego?

Use this chart to determine the optimal time to book a round-trip flight from San Juan to San Diego. Price data was last updated on June 9, 2025.

Booking 17 days in advance of your planned departure date is, on average, the best time to get cheap flights from San Juan to San Diego. The general trend is that the closer you book to the departure date, the more expensive your flight will be.

What is the cheapest month to book a flight from San Juan to San Diego?

Currently, August is the cheapest month in which you can book a flight from San Juan to San Diego (average of $286). Flying from San Juan to San Diego in March is currently the most expensive (average of $366). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from SJU to SAN?

Find hourly flight availability from San Juan to San Diego. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated June 12, 2025.

It’s typically best to fly out from San Juan to San Diego at noon. Doing so could potentially save you 16% on the flight price compared to flying in the morning, which is usually more expensive.

What is the cheapest day to fly from San Juan to San Diego?

Use this chart to determine the cheapest time to fly round-trip from San Juan to San Diego. Price data was last updated on December 16, 2024.

Travelers seeking maximum savings on their San Juan to San Diego flight should consider departing on Friday evenings when fares are most often at their lowest. Sunday afternoons flights should be avoided if possible as fares are typically the most expensive at this time.

Rainfall in San Diego by month

Plan your trip to San Diego by taking into account the average rainfall totals by month.

In terms of precipitation, rainfall in San Diego ranges from 0.0 - 2.3 inches per month. February is typically the wettest month, when rainfall can reach 2.3 in. July is typically the driest time to visit San Diego when rainfall is around 0.0 in.

Temperature in San Diego by month

Plan your trip to San Diego by taking into account the average temperature totals by month.

If weather is an important factor for your trip to San Diego, use this chart to help with planning. For those seeking warmer temperatures, August is the ideal time of year to visit, when temperatures reach an average of 71.6 F. Travelers looking to avoid the cold should look outside of January, when temperatures are typically at their lowest (around 57.2 F).

Reviews of airlines servicing San Diego

Get insights into the airlines that provide service to San Diego. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to San Diego. Reviews last updated June 12, 2025.
Get a feel of what it's like to fly with Alaska Airlines, Southwest and Delta from San Juan to San Diego by reading reviews from past customers. You can also see how each airline stacks up in terms of entertainment options, comfort, food, crew/service, and boarding process.
Alaska Airlines
8.0
Very good
10,000 reviews

Overall

8.0

Food

7.1

Boarding

8.1

Comfort

7.8

Entertainment

7.1

Crew

8.5

Reviews

1 / 20
10.0
Excellent

James,Apr 2025

LAX - SFO

Good flight except the uncontrollable cold air from the ceiling.
Alaska Airlines
8.0
Very good
10,000 reviews
Alaska Airlines
8.0
Very good
10,000 reviews

Overall

8.0

Food

7.1

Boarding

8.1

Comfort

7.8

Entertainment

7.1

Crew

8.5

Reviews

1 / 20
10.0
Excellent

James,Apr 2025

LAX - SFO

Good flight except the uncontrollable cold air from the ceiling.
Southwest
8.0
Very good
4,287 reviews
Alaska Airlines
8.0
Very good
10,000 reviews

Overall

8.0

Food

7.1

Boarding

8.1

Comfort

7.8

Entertainment

7.1

Crew

8.5

Reviews

1 / 20
10.0
Excellent

James,Apr 2025

LAX - SFO

Good flight except the uncontrollable cold air from the ceiling.
Delta
8.0
Very good
7,946 reviews
Alaska Airlines
8.0
Very good
10,000 reviews

Overall

8.0

Food

7.1

Boarding

8.1

Comfort

7.8

Entertainment

7.1

Crew

8.5

Reviews

1 / 20
10.0
Excellent

James,Apr 2025

LAX - SFO

Good flight except the uncontrollable cold air from the ceiling.
United Airlines
7.4
Good
8,790 reviews
Alaska Airlines
8.0
Very good
10,000 reviews

Overall

8.0

Food

7.1

Boarding

8.1

Comfort

7.8

Entertainment

7.1

Crew

8.5

Reviews

1 / 20
10.0
Excellent

James,Apr 2025

LAX - SFO

Good flight except the uncontrollable cold air from the ceiling.
JetBlue
7.3
Good
2,925 reviews
Alaska Airlines
8.0
Very good
10,000 reviews

Overall

8.0

Food

7.1

Boarding

8.1

Comfort

7.8

Entertainment

7.1

Crew

8.5

Reviews

1 / 20
10.0
Excellent

James,Apr 2025

LAX - SFO

Good flight except the uncontrollable cold air from the ceiling.

Related info for your journey

Find useful and relevant information for your journey from San Juan to San Diego. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to San Diego from San Juan?

    Located just 2.6 mi from the city center, San Diego is the airport most travelers will use when flying to San Diego from San Juan. Booking flights from San Juan to San Diego (SAN) should be relatively easy as there are 0 daily inbound flights from San Juan from 5 different airlines.

  • What are the cheapest airlines flying from San Juan to San Diego round-trip?

    Currently priced at $296, Spirit Airlines will fly you from San Juan to San Diego and back. In addition to Spirit Airlines, many other airlines offer competitively priced options for your trip. Search Cheapflights for deals from American Airlines and JetBlue - these airlines can fly you to your destination from $351 and $362, respectively. Spirit Airlines is currently priced 40% below the average price you’ll pay for this route.

  • What are the cheapest airlines to fly from San Juan to San Diego one-way?

    $127 is the cheapest one-way deal found within the past few days, from Spirit Airlines. You may also be able to find cheap deals on American Airlines and Delta, with prices starting from $176 and $207, respectively.

  • Can I find deals for flights from San Juan to San Diego that include hotel bookings?

    Yes. In addition to deals on San Juan to San Diego flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from San Juan to San Diego?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from San Juan to San Diego.

  • Can I find deals for business class flights from San Juan to San Diego?

    Yes. Cheapflights offers flight deals from San Juan to San Diego by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from San Juan to San Diego?

    Currently, August is the cheapest month in which you can book a flight from San Juan to San Diego (average of $286). Flying from San Juan to San Diego in March is currently the most expensive (average of $366). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Traveling to a place near San Juan?

Book flights to San Juan if you plan to visit one of these locations
El Cajon
Chula Vista
National City
Imperial Beach
La Mesa
Alpine
Lemon Grove
Poway
Santee
Coronado

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Top 5 airlines flying from San Juan to San Diego

Discover the top 5 airlines that operate flights from San Juan to San Diego. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated June 12, 2025.
AirlineCheapestAverageFlexibilityOn-time
JetBlueCheapest$303Average$429FlexibilityNo cancel feeOn-time62%
American AirlinesCheapest$310Average$509FlexibilityNo cancel feeOn-time71%
United AirlinesCheapest$318Average$494FlexibilityNo cancel feeOn-time69%
DeltaCheapest$351Average$503FlexibilityNo cancel feeOn-timeN/A
Alaska AirlinesCheapest$464Average$574FlexibilityNo cancel feeOn-time75%

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