For a quick departure, consider using the Long Island Railroad from Penn Station to JFK, taking about 20-25 minutes.

Most accurate provider | CheapOair 3 stars |
|---|---|
Most trusted provider | CheapOair 3 stars |
Round-trip from | $223 (Trip.com) |
One-way from | $123 (Kiwi.com) |
Popular in | December |
Cheapest in | January |
Average price | $337 |
Good round-trip deal | $233 or less |
Good one-way deal | $176 or less |
Fly from
Fly to
Route
Depart
Return
Price
New YorkSan Diego
JFK - SAN
JFKSAN
New York John F Kennedy Intl
Mon 12/15
8:35 pm-11:58 pm
Nonstop6h 23m
San Diego
Wed 12/24
10:10 pm-6:37 am
Nonstop5h 27m
New YorkSan Diego
JFK - SAN
JFKSAN
New York John F Kennedy Intl
Thu 12/4
3:55 pm-7:11 pm
Nonstop6h 16m
San Diego
Mon 12/15
1:57 pm-10:14 pm
Nonstop5h 17m
New YorkSan Diego
JFK - SAN
JFKSAN
New York John F Kennedy Intl
Wed 11/19
5:25 pm-8:34 pm
Nonstop6h 09m
San Diego
Wed 12/3
1:12 pm-9:45 pm
Nonstop5h 33m
New YorkSan Diego
JFK - SAN
JFKSAN
New York John F Kennedy Intl
Thu 12/4
8:35 pm-11:58 pm
Nonstop6h 23m
San Diego
Thu 12/11
1:12 pm-9:45 pm
Nonstop5h 33m
New YorkSan Diego
JFK - SAN
JFKSAN
New York John F Kennedy Intl
Sat 12/6
8:40 am-12:02 pm
Nonstop6h 22m
San Diego
Mon 12/8
10:15 pm-6:42 am
Nonstop5h 27m
New YorkSan Diego
JFK - SAN
JFKSAN
New York John F Kennedy Intl
Sat 12/6
5:45 pm-9:05 pm
Nonstop6h 20m
San Diego
Wed 12/10
7:10 am-3:46 pm
Nonstop5h 36m
New YorkSan Diego
JFK - SAN
JFKSAN
New York John F Kennedy Intl
Thu 1/22
8:34 pm-12:05 am
Nonstop6h 31m
San Diego
Sat 1/31
7:00 am-3:26 pm
Nonstop5h 26m
New YorkSan Diego
JFK - SAN
JFKSAN
New York John F Kennedy Intl
Thu 1/22
8:45 am-12:17 pm
Nonstop6h 32m
San Diego
Mon 1/26
10:15 pm-6:44 am
Nonstop5h 29m
New YorkSan Diego
JFK - SAN
JFKSAN
New York John F Kennedy Intl
Thu 1/8
8:45 am-12:15 pm
Nonstop6h 30m
San Diego
Mon 1/12
1:35 pm-10:06 pm
Nonstop5h 31m
New YorkSan Diego
JFK - SAN
JFKSAN
New York John F Kennedy Intl
Sun 1/25
4:23 pm-7:46 pm
Nonstop6h 23m
San Diego
Sat 1/31
8:59 pm-5:53 pm
1 stop17h 54m
| Provider | Price Accuracy | Trust Score* |
|---|---|---|
| Price Accuracy2 stars | Trust Score*3 stars | |
| Price Accuracy3 stars | Trust Score*1 star | |
| Price Accuracy3 stars | Trust Score*3 stars | |
| Price Accuracy3 stars | Trust Score*2 stars | |
| Price Accuracy1 star | Trust Score*3 stars | |
| Price Accuracy- | Trust Score*1 star | |
| Price Accuracy3 stars | Trust Score*3 stars | |
| Price Accuracy2 stars | Trust Score*2 stars | |
| Price Accuracy2 stars | Trust Score*3 stars | |
| Price Accuracy3 stars | Trust Score*3 stars |
Booking 64 days in advance of your planned departure date is, on average, the best time to get cheap flights from New York John F Kennedy Intl Airport to San Diego. The general trend is that the closer you book to the departure date, the more expensive your flight will be.
Currently, March is the cheapest month in which you can book a flight from New York John F Kennedy Intl Airport to San Diego (average of $97). Flying from New York John F Kennedy Intl Airport to San Diego in December is currently the most expensive (average of $202). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.
It’s typically best to fly out from New York John F Kennedy Intl Airport to San Diego at noon. Doing so could potentially save you 51% on the flight price compared to flying in the morning, which is usually more expensive.
Travelers seeking maximum savings on their New York John F Kennedy Intl Airport to San Diego flight should consider departing on Thursday at noon when fares are most often at their lowest. Tuesday at noon flights should be avoided if possible as fares are typically the most expensive at this time.
Dallas (DFW) – chosen by Cheapflights users on 70% of 1-stop itineraries from New York John F Kennedy Intl Airport to San Diego on Cheapflights.
Flights via Las Vegas (LAS) have the shortest average one-way travel time for 1-stop routes: 10h 28m.
Flights via Las Vegas (LAS) have the shortest average one-way travel time for 1-stop routes: 10h 28m.
Flights via Las Vegas (LAS) offer the fastest connection on this route, with an average layover time of 3h 00m.
Entertainment
Boarding
Food
Overall
Comfort
Crew
Reviews
Hannah,Aug 2025
SFO - SAN
Entertainment
Boarding
Food
Overall
Comfort
Crew
Reviews
Hannah,Aug 2025
SFO - SAN
Entertainment
Boarding
Food
Overall
Comfort
Crew
Reviews
Hannah,Aug 2025
SFO - SAN
Entertainment
Boarding
Food
Overall
Comfort
Crew
Reviews
Hannah,Aug 2025
SFO - SAN
Entertainment
Boarding
Food
Overall
Comfort
Crew
Reviews
Hannah,Aug 2025
SFO - SAN
Entertainment
Boarding
Food
Overall
Comfort
Crew
Reviews
Hannah,Aug 2025
SFO - SAN
| Airline | Cheapest | Average | Flexibility | On-time |
|---|---|---|---|---|
| Cheapest$124 | Average$268 | FlexibilityNo cancel fee | On-time62% | |
| Cheapest$148 | Average$364 | FlexibilityNo cancel fee | On-time85% | |
| Cheapest$162 | Average$360 | FlexibilityNo cancel fee | On-time62% | |
| Cheapest$194 | Average$407 | FlexibilityNo cancel fee | On-timeN/A | |
| Cheapest$244 | Average$397 | FlexibilityNo cancel fee | On-time71% | |
| Cheapest$255 | Average$439 | FlexibilityNo cancel fee | On-time75% |