HomeSearch by dateVacation packagesHotelsFlight dealsCar rentalTravel tips & news
Santorini

$76+ Cheap flights from Heraklion to Thera (HER - JTR)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 3/25. Fares are subject to change and may not be available on all flights or dates of travel.
HER — JTR
Feb 28 — Mar 71
Sat 2/28
Sat 3/7
1 adult, Economy
We work with more than 300 partners to bring you better travel deals

Find cheap flights from Heraklion to Santorini with Cheapflights

1. Tell us where you want to go

Enter your travel information like dates, passengers, trip type (one-way or round trip), and preferred cabin class then click “Find deals”

2. Select your favorite providers

We find the providers serving your travel needs. Choose up to four travel providers to compare side-by-side for flights, hotels, or car rentals.

3. Compare prices and book

Review each provider’s pricing and select the best option for you! Book through your favorite provider’s website for a seamless experience.

Cheap flight deals from Heraklion to Santorini

Cheapest flights from Heraklion to Santorini
Explore the most affordable flight options available from Heraklion to Santorini. Find the lowest fares from popular airlines and budget airlines, with prices last updated on January 29, 2026.

This Booking.com deal was found by Cheapflights users on 1/27. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 2/269:45 pm
HER
-
JTR
1 stop15h 00m
Sky Express
Mon 3/29:35 pm
JTR
-
HER
1 stop10h 25m
Sky Express
Deal found 1/27$181
This Kiwi.com deal was found by Cheapflights users on 1/28. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 4/1510:25 pm
HER
-
JTR
1 stop8h 35m
Multiple Airlines
Fri 4/173:25 pm
JTR
-
HER
1 stop2h 50m
Multiple Airlines
Deal found 1/28$249
This Kiwi.com deal was found by Cheapflights users on 1/27. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 2/2611:45 pm
HER
-
JTR
2 stops14h 30m
Multiple Airlines
Mon 3/29:35 pm
JTR
-
HER
1 stop10h 25m
Multiple Airlines
Deal found 1/27$274
This Sky Express deal was found by Cheapflights users on 1/26. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Sky Express is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 6/98:40 am
HER
-
JTR
1 stop9h 05m
Sky Express
Wed 6/109:45 pm
JTR
-
HER
1 stop10h 15m
Sky Express
Deal found 1/26$338

Find flight deals from Heraklion to Santorini

Discover tips and strategies to find the most affordable flight options for your journey from Heraklion (HER) to Santorini (JTR). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated January 29, 2026.

Most accurate provider

FlightHub
3 stars

Most trusted provider

FlightHub
3 stars

Round-trip from

$181
(Booking.com)

One-way from

$76
(Booking.com)

Popular in

April

Cheapest in

May
Provider with most accurate pricing for Heraklion N. Kazantzakis Apt.-Thera Santorini flight deals.
Search Deals
Provider most trusted by Cheapflights users for Heraklion N. Kazantzakis Apt.-Thera Santorini flights.
Search Deals
From Heraklion N. Kazantzakis Apt. to Thera Santorini
Search Deals
One-way flight from Heraklion N. Kazantzakis Apt. to Thera Santorini
Search Deals
Highest demand for flights based on searches. 6% potential increase in price ($15 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 5% potential price decrease ($13 potential savings vs. average RT price).
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from Heraklion to Santorini that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated January 29, 2026.
Use the filters below to find and compare flights from Heraklion to Thera that are best for you.

Fly from

Heraklion

Fly to

Santorini

Route

Depart

Return

Price

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Thu 2/26

9:45 pm-12:45 pm

1 stop15h 00m

Thera Santorini

Mon 3/2

9:35 pm-8:00 am

1 stop10h 25m

$181

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Wed 4/15

10:25 pm-7:00 am

1 stop8h 35m

Thera Santorini

Fri 4/17

3:25 pm-6:15 pm

1 stop2h 50m

$249

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Thu 2/26

11:45 pm-2:15 pm

2 stops14h 30m

Thera Santorini

Mon 3/2

9:35 pm-8:00 am

1 stop10h 25m

$274

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Tue 6/9

8:40 am-5:45 pm

1 stop9h 05m

Thera Santorini

Wed 6/10

9:45 pm-8:00 am

1 stop10h 15m

$338

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Thu 5/14

10:25 pm-11:25 am

1 stop13h 00m

$80

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Sat 5/16

11:30 pm-11:25 am

1 stop11h 55m

$80

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Wed 4/1

10:25 pm-2:25 pm

1 stop16h 00m

$90

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Sun 7/5

12:30 pm-2:55 pm

1 stop2h 25m

$93

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Fri 5/15

6:55 pm-9:15 pm

1 stop2h 20m

$95

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Mon 2/9

7:55 pm-10:25 pm

1 stop2h 30m

$117

Flights are sorted by cheapest round-trip flights first.

Deals found on 1/29

Showing 1-10 of 14 results
1
2
  • Most accurate provider: When it comes to deals on Heraklion-Thera flights, users find the pricing of FlightHub to be most consistent on Cheapflights vs. FlightHub Users can find the same prices on Heraklion-Thera flight deals on Cheapflights vs. FlightHub >95% of the time. Price accuracy is based on data collected from Heraklion-Thera flight searches over the past month and is updated monthly.
  • Most trusted provider: When it comes to deals on Heraklion-Thera flights, Cheapflights users trust FlightHub the most. FlightHub has received a user feedback score of 3 out of 3 stars (3 being the best), meaning they have been trusted the most by Cheapflights users looking for Heraklion-Thera flight deals. Provider user feedback score is based on Cheapflights searches over the past month and is updated monthly.

Best time to book a flight from Heraklion to Santorini

Have a flexible travel schedule? Discover the best time to fly to Santorini from Heraklion with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Heraklion to Thera

How often are flights from Heraklion to Thera delayed?

About 0% of weekly flights between Heraklion and Thera have experienced delays in the past year, with the average delay time being 0 minutes.

What is the most punctual flight time for Heraklion to Thera flights?

Historically, flights departing in the morning are less likely to be delayed, whereas flights leaving in the early afternoon tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Friday tends to have the lowest number of delays on this route, whereas Sunday has historically faced a higher average of delays compared to other days of the week.

Related info for your journey

Find useful and relevant information for your journey from Heraklion to Santorini. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How long is the flight from Heraklion to Thera?

    Departing from Heraklion to Thera will take you 15h. The distance between Heraklion and Thera is about 75 mi.

  • Can I find deals for flights from Heraklion to Santorini that include hotel bookings?

    Yes. In addition to deals on Heraklion to Santorini flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Heraklion to Santorini?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Heraklion to Santorini.

  • Can I find deals for business class flights from Heraklion to Santorini?

    Yes. Cheapflights offers flight deals from Heraklion to Santorini by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Traveling to a place near Thera?

Book flights to Thera if you plan to visit one of these locations
Oia
Kamari
Imerovigli

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Alternative routes for Heraklion to Santorini

See prices for flight routes from nearby airports that may be better suited for you.
Chania to Santorini flights
Heraklion to Rhodes flights

100% Free

Cheapflights is completely free to use, so you can start saving the moment you arrive.

Book with Flexibility

Our users can plan ahead with confidence and find flights with no change fees

Travel Smart

Millions of people come to us for their flight needs every year. We help make travel planning easy by providing useful insights and data-driven graphs that can inform your decisions.