HomeSearch by dateVacation packagesHotelsFlight dealsCar rentalTravel tips & news
Santorini

$67+ Cheap flights from Heraklion to Thera (HER - JTR)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 10/12. Fares are subject to change and may not be available on all flights or dates of travel.
HER — JTR
Jun 17 — Jun 241
Tue 6/17
Tue 6/24
1 adult, Economy
We work with more than 300 partners to bring you better travel deals

Find cheap flights from Heraklion to Santorini with Cheapflights

1. Tell us where you want to go

Enter your travel information like dates, passengers, trip type (one-way or round trip), and preferred cabin class then click “Find deals”

2. Select your favorite providers

We find the providers serving your travel needs. Choose up to four travel providers to compare side-by-side for flights, hotels, or car rentals.

3. Compare prices and book

Review each provider’s pricing and select the best option for you! Book through your favorite provider’s website for a seamless experience.

Cheap flight deals from Heraklion to Santorini

Discover tips and strategies to find the most affordable flight options for your journey from Heraklion (HER) to Santorini (JTR). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated June 12, 2025.

Round-trip from

$126
(Mytrip)

One-way from

$67
(Booking.com)

Popular in

April

Cheapest in

May

Average price

$315
From Heraklion N. Kazantzakis Apt. to Thera Santorini
Search Deals
One-way flight from Heraklion N. Kazantzakis Apt. to Thera Santorini
Search Deals
Highest demand for flights based on searches. 1% potential increase in price ($2 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 4% potential price decrease ($11 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in June 2025
Search Deals

Find flight deals from Heraklion to Santorini

Cheapest flights from Heraklion to Santorini
Explore the most affordable flight options available from Heraklion to Santorini. Find the lowest fares from popular airlines and budget airlines, with prices last updated on June 12, 2025.

This Mytrip deal was found by Cheapflights users on 6/11. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 10/2310:40 pmHER - JTR
1 stop12h 45mSky Express
Sat 10/2511:55 amJTR - HER
1 stop6h 20mSky Express
Deal found 6/11$126
This Mytrip deal was found by Cheapflights users on 6/11. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 7/810:35 amHER - JTR
1 stop7h 20mVolotea
Wed 7/96:15 pmJTR - HER
1 stop14h 30mVolotea
Deal found 6/11$167
This Kiwi.com deal was found by Cheapflights users on 6/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 9/611:35 amHER - JTR
1 stop6h 25mMultiple Airlines
Sat 9/611:50 pmJTR - HER
1 stop7h 40mMultiple Airlines
Deal found 6/10$204
This Aegean Airlines deal was found by Cheapflights users on 6/11. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 7/78:10 amHER - JTR
1 stop2h 45mAegean Airlines
Wed 7/99:40 amJTR - HER
1 stop2h 40mAegean Airlines
Deal found 6/11$247

Cheapflights Fare Finder

Customize your flight search to find flights from Heraklion to Santorini that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated June 12, 2025.
Use the filters below to find and compare flights from Heraklion to Thera that are best for you.

Fly from

Heraklion

Fly to

Santorini

Route

Depart

Return

Price

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Thu 10/23

10:40 pm-11:25 am

1 stop12h 45m

Thera Santorini

Sat 10/25

11:55 am-6:15 pm

1 stop6h 20m

$126

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Tue 7/8

10:35 am-5:55 pm

1 stop7h 20m

Thera Santorini

Wed 7/9

6:15 pm-8:45 am

1 stop14h 30m

$167

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Sat 9/6

11:35 am-6:00 pm

1 stop6h 25m

Thera Santorini

Sat 9/6

11:50 pm-7:30 am

1 stop7h 40m

$204

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Mon 7/7

8:10 am-10:55 am

1 stop2h 45m

Thera Santorini

Wed 7/9

9:40 am-12:20 pm

1 stop2h 40m

$247

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Sun 10/12

6:25 pm-12:15 am

1 stop5h 50m

$67

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Fri 7/25

11:20 pm-11:25 pm

1 stop24h 05m

$88

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Tue 7/22

12:40 am-8:05 am

1 stop7h 25m

$116

Flights are sorted by cheapest round-trip flights first.

Deals found on 6/10

Best time to book a flight from Heraklion to Santorini

Have a flexible travel schedule? Discover the best time to fly to Santorini from Heraklion with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Reviews of airlines servicing Santorini

Get insights into the airlines that provide service to Santorini. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Santorini. Reviews last updated June 12, 2025.
Aegean Airlines
8.2
Very good
759 reviews

Boarding

7.8

Comfort

7.9

Food

7.4

Overall

8.2

Entertainment

7.0

Crew

8.6

Reviews

1 / 20
10.0
Excellent

Anonymous,Nov 2024

SKG - FRA

I am very proud of them. Everything was very nice everything thank you
Aegean Airlines
8.2
Very good
759 reviews
Aegean Airlines
8.2
Very good
759 reviews

Boarding

7.8

Comfort

7.9

Food

7.4

Overall

8.2

Entertainment

7.0

Crew

8.6

Reviews

1 / 20
10.0
Excellent

Anonymous,Nov 2024

SKG - FRA

I am very proud of them. Everything was very nice everything thank you
Sky Express
7.6
Good
113 reviews
Aegean Airlines
8.2
Very good
759 reviews

Boarding

7.8

Comfort

7.9

Food

7.4

Overall

8.2

Entertainment

7.0

Crew

8.6

Reviews

1 / 20
10.0
Excellent

Anonymous,Nov 2024

SKG - FRA

I am very proud of them. Everything was very nice everything thank you
Volotea
7.2
Good
564 reviews
Aegean Airlines
8.2
Very good
759 reviews

Boarding

7.8

Comfort

7.9

Food

7.4

Overall

8.2

Entertainment

7.0

Crew

8.6

Reviews

1 / 20
10.0
Excellent

Anonymous,Nov 2024

SKG - FRA

I am very proud of them. Everything was very nice everything thank you
Wizz Air
6.8
Okay
361 reviews
Aegean Airlines
8.2
Very good
759 reviews

Boarding

7.8

Comfort

7.9

Food

7.4

Overall

8.2

Entertainment

7.0

Crew

8.6

Reviews

1 / 20
10.0
Excellent

Anonymous,Nov 2024

SKG - FRA

I am very proud of them. Everything was very nice everything thank you

Related info for your journey

Find useful and relevant information for your journey from Heraklion to Santorini. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What are the cheapest airlines flying from Heraklion to Thera round-trip?

    Sky Express, at $126, was found to be the cheapest airline from Heraklion to Thera.Alternate airlines to your destination round-trip include Volotea and Aegean Airlines. Sky Express is 46% cheaper than the average price of flights available within the next 90 days to this destination.

  • Can I find deals for flights from Heraklion to Santorini that include hotel bookings?

    Yes. In addition to deals on Heraklion to Santorini flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Heraklion to Santorini?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Heraklion to Santorini.

  • Can I find deals for business class flights from Heraklion to Santorini?

    Yes. Cheapflights offers flight deals from Heraklion to Santorini by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Traveling to a place near Heraklion?

Book flights to Heraklion if you plan to visit one of these locations
Kamari
Oia
Imerovigli
Perissa

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Alternative routes for Heraklion to Santorini

See prices for flight routes from nearby airports that may be better suited for you.
Heraklion to Rhodes flights
Chania to Santorini flights

100% Free

Cheapflights is completely free to use, so you can start saving the moment you arrive.

Book with Flexibility

Our users can plan ahead with confidence and find flights with no change fees

Travel Smart

Millions of people come to us for their flight needs every year. We help make travel planning easy by providing useful insights and data-driven graphs that can inform your decisions.