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Santorini

$49+ Cheap flights from Heraklion to Thera (HER - JTR)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 6/16. Fares are subject to change and may not be available on all flights or dates of travel.
HER — JTR
Apr 13 — Apr 201
Mon 4/13
Mon 4/20
1 adult, Economy
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Cheap flight deals from Heraklion to Santorini

Cheapest flights from Heraklion to Santorini
Explore the most affordable flight options available from Heraklion to Santorini. Find the lowest fares from popular airlines and budget airlines, with prices last updated on March 14, 2026.

This Kiwi.com deal was found by Cheapflights users on 3/13. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 8/2811:20 pm
HER
-
JTR
1 stop8h 25m
Aegean Airlines
Tue 9/15:45 pm
JTR
-
HER
Nonstop0h 40m
Aegean Airlines
Deal found 3/13$158
This Kiwi.com deal was found by Cheapflights users on 3/13. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 8/2811:20 pm
HER
-
JTR
1 stop7h 45m
Multiple Airlines
Tue 9/13:25 pm
JTR
-
HER
1 stop2h 50m
Multiple Airlines
Deal found 3/13$210
This Booking.com deal was found by Cheapflights users on 3/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 4/231:00 pm
HER
-
JTR
1 stop2h 55m
Multiple Airlines
Mon 4/279:45 pm
JTR
-
HER
1 stop10h 15m
Multiple Airlines
Deal found 3/10$212
This Sky Express deal was found by Cheapflights users on 3/14. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Sky Express is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 12/139:45 pm
HER
-
JTR
1 stop15h 00m
Sky Express
Wed 12/169:35 pm
JTR
-
HER
1 stop23h 30m
Sky Express
Deal found 3/14$266

Find flight deals from Heraklion to Santorini

Discover tips and strategies to find the most affordable flight options for your journey from Heraklion (HER) to Santorini (JTR). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated March 14, 2026.

Most accurate provider

FlightHub
3 stars

Most trusted provider

FlightHub
3 stars

Round-trip from

$158
(Kiwi.com)

One-way from

$49
(Booking.com)
Provider with most accurate pricing for Heraklion N. Kazantzakis Apt.-Thera Santorini flight deals.
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Provider most trusted by Cheapflights users for Heraklion N. Kazantzakis Apt.-Thera Santorini flights.
Search Deals
From Heraklion N. Kazantzakis Apt. to Thera Santorini
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One-way flight from Heraklion N. Kazantzakis Apt. to Thera Santorini
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Cheapflights Fare Finder

 
Customize your flight search to find flights from Heraklion to Santorini that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated March 14, 2026.
Use the filters below to find and compare flights from Heraklion to Thera that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Fri 8/28

11:20 pm-7:05 am

1 stop7h 45m

Thera Santorini

Tue 9/1

3:25 pm-6:15 pm

1 stop2h 50m

$210

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Thu 4/23

1:00 pm-3:55 pm

1 stop2h 55m

Thera Santorini

Mon 4/27

9:45 pm-8:00 am

1 stop10h 15m

$212
Quickest round-trip

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Fri 8/28

5:35 pm-12:15 am

2 stops6h 40m

Thera Santorini

Tue 9/1

10:00 pm-12:35 am

1 stop2h 35m

$811
Cheapest one-way
Quickest one-way

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Sat 8/29

4:20 pm-5:00 pm

Nonstop0h 40m

$55

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Tue 8/18

4:30 pm-5:10 pm

Nonstop0h 40m

$69

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Thu 8/27

11:20 pm-7:45 am

1 stop8h 25m

$95

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Sun 5/24

6:00 am-8:40 am

1 stop2h 40m

$97

Flights are sorted by cheapest round-trip flights first.

Deals found on 3/13

Sorted by cheapest first
  • Most accurate provider: When it comes to deals on Heraklion-Thera flights, users find the pricing of FlightHub to be most consistent on Cheapflights vs. FlightHub Users can find the same prices on Heraklion-Thera flight deals on Cheapflights vs. FlightHub >95% of the time. Price accuracy is based on data collected from Heraklion-Thera flight searches over the past month and is updated monthly.
  • Most trusted provider: When it comes to deals on Heraklion-Thera flights, Cheapflights users trust FlightHub the most. FlightHub has received a user feedback score of 3 out of 3 stars (3 being the best), meaning they have been trusted the most by Cheapflights users looking for Heraklion-Thera flight deals. Provider user feedback score is based on Cheapflights searches over the past month and is updated monthly.

Best time to book a flight from Heraklion to Santorini

Have a flexible travel schedule? Discover the best time to fly to Santorini from Heraklion with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Heraklion to Thera

How often are flights from Heraklion to Thera delayed?

About 0% of weekly flights between Heraklion and Thera have experienced delays in the past year, with the average delay time being 0 minutes.

What is the most punctual flight time for Heraklion to Thera flights?

Historically, flights departing in the morning are less likely to be delayed, whereas flights leaving in the early afternoon tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Friday tends to have the lowest number of delays on this route, whereas Sunday has historically faced a higher average of delays compared to other days of the week.

Related info for your journey

Find useful and relevant information for your journey from Heraklion to Santorini. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • Can I find deals for flights from Heraklion to Santorini that include hotel bookings?

    Yes. In addition to deals on Heraklion to Santorini flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Heraklion to Santorini?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Heraklion to Santorini.

  • Can I find deals for business class flights from Heraklion to Santorini?

    Yes. Cheapflights offers flight deals from Heraklion to Santorini by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

Traveling to a place near Thera?

Book flights to Thera if you plan to visit one of these locations
Oia
Kamari
Imerovigli

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