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Santorini

$41+ Cheap flights from Heraklion to Thera (HER - JTR)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 11/13. Fares are subject to change and may not be available on all flights or dates of travel.
HER — JTR
Oct 11 — Oct 181
Sat 10/11
Sat 10/18
1 adult, Economy
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Cheap flight deals from Heraklion to Santorini

Discover tips and strategies to find the most affordable flight options for your journey from Heraklion (HER) to Santorini (JTR). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated September 11, 2025.

Round-trip from

$155
(Booking.com)

One-way from

$41
(Booking.com)

Popular in

April

Cheapest in

May

Average price

$203
From Heraklion N. Kazantzakis Apt. to Thera Santorini
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One-way flight from Heraklion N. Kazantzakis Apt. to Thera Santorini
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Highest demand for flights based on searches. 5% potential increase in price ($12 potential increase over avg. RT price).
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Cheapest flight prices on average. 5% potential price decrease ($11 potential savings vs. average RT price).
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Average for round-trip flights in September 2025
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Find flight deals from Heraklion to Santorini

Cheapest flights from Heraklion to Santorini
Explore the most affordable flight options available from Heraklion to Santorini. Find the lowest fares from popular airlines and budget airlines, with prices last updated on September 11, 2025.

This Booking.com deal was found by Cheapflights users on 9/11. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 11/611:35 amHER - JTR
1 stop2h 40mMultiple Airlines
Sun 11/95:05 pmJTR - HER
1 stop14h 55mMultiple Airlines
Deal found 9/11$155
This Booking.com deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 10/1011:20 pmHER - JTR
1 stop8h 25mAegean Airlines
Fri 10/1710:00 pmJTR - HER
1 stop9h 30mAegean Airlines
Deal found 9/10$167
This Aegean Airlines deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/89:50 pmHER - JTR
1 stop2h 25mAegean Airlines
Wed 10/156:40 pmJTR - HER
1 stop4h 00mAegean Airlines
Deal found 9/10$188
This OneTravel deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure OneTravel is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 9/1611:35 amHER - JTR
1 stop6h 25mAegean Airlines
Tue 9/1610:00 pmJTR - HER
1 stop9h 30mAegean Airlines
Deal found 9/10$219
This Kiwi.com deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 10/1011:55 pmHER - JTR
2 stops9h 05mMultiple Airlines
Fri 10/1710:00 pmJTR - HER
1 stop9h 30mMultiple Airlines
Deal found 9/10$277
This Mytrip deal was found by Cheapflights users on 9/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 9/166:00 amHER - JTR
1 stop3h 00mMultiple Airlines
Tue 9/1612:30 pmJTR - HER
2 stops32h 25mMultiple Airlines
Deal found 9/10$367
This Aegean Airlines deal was found by Cheapflights users on 9/11. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Aegean Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 9/209:50 pmHER - JTR
1 stop2h 25mAegean Airlines
Fri 9/264:35 pmJTR - HER
1 stop4h 20mAegean Airlines
Deal found 9/11$415
This Kiwi.com deal was found by Cheapflights users on 9/11. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 11/64:45 pmHER - JTR
1 stop5h 30mAegean Airlines
Sun 11/98:25 amJTR - HER
2 stops8h 25mAegean Airlines
Deal found 9/11$459

Cheapflights Fare Finder

 
Customize your flight search to find flights from Heraklion to Santorini that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated September 11, 2025.
Use the filters below to find and compare flights from Heraklion to Thera that are best for you.

Fly from

Heraklion

Fly to

Santorini

Route

Depart

Return

Price

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Thu 11/6

11:35 am-2:15 pm

1 stop2h 40m

Thera Santorini

Sun 11/9

5:05 pm-8:00 am

1 stop14h 55m

$155

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Fri 10/10

11:20 pm-7:45 am

1 stop8h 25m

Thera Santorini

Fri 10/17

10:00 pm-7:30 am

1 stop9h 30m

$167

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Wed 10/8

9:50 pm-12:15 am

1 stop2h 25m

Thera Santorini

Wed 10/15

6:40 pm-10:40 pm

1 stop4h 00m

$188

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Fri 10/3

9:50 pm-12:15 am

1 stop2h 25m

Thera Santorini

Sat 10/4

6:40 pm-10:40 pm

1 stop4h 00m

$238

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Fri 10/10

11:55 pm-9:00 am

2 stops9h 05m

Thera Santorini

Fri 10/17

10:00 pm-7:30 am

1 stop9h 30m

$277

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Thu 11/6

4:45 pm-10:15 pm

1 stop5h 30m

Thera Santorini

Sun 11/9

8:25 am-4:50 pm

2 stops8h 25m

$459

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Tue 9/30

9:25 pm-8:15 pm

1 stop22h 50m

$68

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Fri 11/14

8:10 am-10:55 am

1 stop2h 45m

$74

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Thu 11/6

11:35 am-5:50 pm

1 stop6h 15m

$74

HeraklionThera

HER - JTR

HERJTR

Heraklion N. Kazantzakis Apt.

Sun 11/9

11:35 am-5:50 pm

1 stop6h 15m

$74

Flights are sorted by cheapest round-trip flights first.

Deals found on 9/11

Showing 1-10 of 18 results
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Best time to book a flight from Heraklion to Santorini

Have a flexible travel schedule? Discover the best time to fly to Santorini from Heraklion with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Related info for your journey

Find useful and relevant information for your journey from Heraklion to Santorini. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How long is the flight from Heraklion to Thera?

    Departing from Heraklion to Thera will take you 8h 25m. The distance between Heraklion and Thera is about 75 mi.

  • Can I find deals for flights from Heraklion to Santorini that include hotel bookings?

    Yes. In addition to deals on Heraklion to Santorini flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Heraklion to Santorini?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Heraklion to Santorini.

  • Can I find deals for business class flights from Heraklion to Santorini?

    Yes. Cheapflights offers flight deals from Heraklion to Santorini by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Traveling to a place near Thera?

Book flights to Thera if you plan to visit one of these locations
Oia
Kamari
Imerovigli

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