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San Juan

$111+ Cheap flights from San Diego (SAN) to San Juan

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 1/9. Fares are subject to change and may not be available on all flights or dates of travel.
SAN — SJU
Dec 11 — Dec 181
Thu 12/11
Thu 12/18
1 adult, Economy
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Cheapflights Tip: The best prices from San Diego to San Juan are usually found in October or January, booked 19 days in advance, depart on a Saturday or Tuesday and return on a Thursday

Cheap flight deals from San Diego to San Juan

Discover tips and strategies to find the most affordable flight options for your journey from San Diego (SAN) to San Juan (PR1). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated November 11, 2025.

Round-trip from

$330
(Kiwi.com)

One-way from

$111
(Kiwi.com)

Popular in

December

Cheapest in

October

Average price

$512
From San Diego to San Juan
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One-way flight from San Diego to San Juan
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Highest demand for flights based on searches. 4% potential increase in price ($25 potential increase over avg. RT price).
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Cheapest flight prices on average. 2% potential price decrease ($15 potential savings vs. average RT price).
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Average for round-trip flights in November 2025
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Find flight deals from San Diego to San Juan

Cheapest flights from San Diego to San Juan
Explore the most affordable flight options available from San Diego to San Juan. Find the lowest fares from popular airlines and budget airlines, with prices last updated on November 11, 2025.

This United Airlines deal was found by Cheapflights users on 11/9. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 12/108:40 pmSAN - SJU
2 stops12h 37mUnited Airlines
Tue 12/168:10 amSJU - SAN
1 stop11h 20mUnited Airlines
Deal found 11/9$334
This Kiwi.com deal was found by Cheapflights users on 11/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 12/56:45 amSAN - SJU
1 stop13h 50mMultiple Airlines
Mon 12/811:05 amSJU - SAN
2 stops39h 41mMultiple Airlines
Deal found 11/10$337
This American Airlines deal was found by Cheapflights users on 11/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure American Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 12/29:42 amSAN - SJU
2 stops11h 02mAmerican Airlines
Wed 12/106:00 amSJU - SAN
2 stops13h 48mAmerican Airlines
Deal found 11/10$338
This Kiwi.com deal was found by Cheapflights users on 11/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 12/56:45 amSAN - SJU
1 stop13h 50mMultiple Airlines
Sat 12/138:00 amSJU - SAN
2 stops39h 15mMultiple Airlines
Deal found 11/10$343
This Kiwi.com deal was found by Cheapflights users on 11/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 12/116:25 amSAN - SJU
1 stop14h 10mMultiple Airlines
Tue 12/166:00 amSJU - SAN
2 stops20h 46mMultiple Airlines
Deal found 11/10$348
This Kiwi.com deal was found by Cheapflights users on 11/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 12/56:45 amSAN - SJU
1 stop13h 50mMultiple Airlines
Wed 12/107:31 pmSJU - SAN
2 stops27h 44mMultiple Airlines
Deal found 11/10$352
This Kiwi.com deal was found by Cheapflights users on 11/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 12/106:34 amSAN - SJU
2 stops23h 03mMultiple Airlines
Thu 12/181:22 pmSJU - SAN
1 stop12h 43mMultiple Airlines
Deal found 11/10$353
This Kiwi.com deal was found by Cheapflights users on 11/9. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 11/271:21 pmSAN - SJU
1 stop31h 06mMultiple Airlines
Wed 12/39:15 amSJU - SAN
2 stops17h 31mMultiple Airlines
Deal found 11/9$358
This Delta deal was found by Cheapflights users on 11/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Delta is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 12/910:15 pmSAN - SJU
1 stop10h 43mDelta
Tue 12/167:00 amSJU - SAN
1 stop10h 02mDelta
Deal found 11/10$360
This Kiwi.com deal was found by Cheapflights users on 11/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 12/76:25 amSAN - SJU
1 stop14h 10mMultiple Airlines
Tue 12/166:00 amSJU - SAN
2 stops20h 46mMultiple Airlines
Deal found 11/10$362
This United Airlines deal was found by Cheapflights users on 11/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 12/1310:34 pmSAN - SJU
1 stop10h 15mUnited Airlines
Wed 12/177:45 amSJU - SAN
1 stop12h 31mUnited Airlines
Deal found 11/8$363
This Kiwi.com deal was found by Cheapflights users on 11/10. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 12/48:10 pmSAN - SJU
2 stops42h 13mMultiple Airlines
Thu 12/111:27 pmSJU - SAN
1 stop14h 24mMultiple Airlines
Deal found 11/10$366

Cheapflights Fare Finder

 
Customize your flight search to find flights from San Diego to San Juan that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated November 11, 2025.
Use the filters below to find and compare flights from San Diego to San Juan that are best for you.

Fly from

San Diego

Fly to

San Juan

Route

Depart

Return

Price

San DiegoSan Juan

SAN - SJU

SANSJU

San Diego

Fri 1/30

10:40 pm-12:55 pm

1 stop10h 15m

San Juan Luis Munoz Marin Intl

Mon 2/2

2:05 am-12:27 pm

1 stop14h 22m

$353

San DiegoSan Juan

SAN - SJU

SANSJU

San Diego

Wed 12/10

7:00 am-12:35 am

2 stops13h 35m

San Juan Luis Munoz Marin Intl

Wed 12/17

11:20 am-6:40 pm

2 stops11h 20m

$373

San DiegoSan Juan

SAN - SJU

SANSJU

San Diego

Tue 1/27

7:05 am-11:10 pm

1 stop12h 05m

San Juan Luis Munoz Marin Intl

Sun 2/1

8:00 am-7:45 pm

1 stop15h 45m

$374

San DiegoSan Juan

SAN - SJU

SANSJU

San Diego

Tue 3/3

6:15 am-9:26 pm

2 stops11h 11m

San Juan Luis Munoz Marin Intl

Tue 3/3

2:05 am-10:20 am

1 stop12h 15m

$380

San DiegoSan Juan

SAN - SJU

SANSJU

San Diego

Tue 2/3

7:00 am-9:00 pm

1 stop10h 00m

San Juan Luis Munoz Marin Intl

Mon 2/9

2:05 am-12:27 pm

1 stop14h 22m

$385

San DiegoSan Juan

SAN - SJU

SANSJU

San Diego

Sat 2/21

3:40 pm-6:11 am

1 stop10h 31m

San Juan Luis Munoz Marin Intl

Mon 2/23

2:05 am-12:29 pm

1 stop14h 24m

$385

San DiegoSan Juan

SAN - SJU

SANSJU

San Diego

Sat 2/28

10:30 pm-2:40 pm

1 stop12h 10m

San Juan Luis Munoz Marin Intl

Wed 3/11

1:05 am-10:24 am

1 stop12h 19m

$385

San DiegoSan Juan

SAN - SJU

SANSJU

San Diego

Mon 3/2

6:10 pm-12:49 pm

2 stops14h 39m

San Juan Luis Munoz Marin Intl

Fri 3/6

2:05 am-10:24 am

1 stop12h 19m

$385

San DiegoSan Juan

SAN - SJU

SANSJU

San Diego

Mon 12/8

9:55 pm-1:17 pm

1 stop11h 22m

San Juan Luis Munoz Marin Intl

Tue 12/16

2:05 am-9:59 am

1 stop11h 54m

$393

San DiegoSan Juan

SAN - SJU

SANSJU

San Diego

Tue 1/13

6:15 am-9:39 pm

2 stops11h 24m

$148

Flights are sorted by cheapest round-trip flights first.

Deals found on 11/9

Showing 1-10 of 15 results
1
2

Best time to book a flight from San Diego to San Juan

Have a flexible travel schedule? Discover the best time to fly to San Juan from San Diego with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from San Diego to San Juan

How far ahead should I book a flight from San Diego to San Juan?

Use this chart to determine the optimal time to book a round-trip flight from San Diego to San Juan. Price data was last updated on November 7, 2025.

The price you pay for your flight from San Diego to San Juan may vary depending on when you book. For the best chance of a lower fare, look to book 19 days in advance of your trip. Fares are likely to increase a fortnight or so before your departure date.

What is the cheapest month to book a flight from San Diego to San Juan?

Currently, April is the cheapest month in which you can book a flight from San Diego to San Juan (average of $128). Flying from San Diego to San Juan in August is currently the most expensive (average of $366). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from SAN to SJU?

Find hourly flight availability from San Diego to San Juan. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated November 11, 2025.

It’s typically best to fly out from San Diego to San Juan in the afternoon. Doing so could potentially save you 27% on the flight price compared to flying in the morning, which is usually more expensive.

What is the cheapest day to fly from San Diego to San Juan?

Use this chart to determine the cheapest time to fly round-trip from San Diego to San Juan. Price data was last updated on December 16, 2024.

Travelers seeking maximum savings on their San Diego to San Juan flight should consider departing on Saturday at noon when fares are most often at their lowest. Sunday at noon flights should be avoided if possible as fares are typically the most expensive at this time.

Reviews of airlines servicing San Juan

Get insights into the airlines that provide service to San Juan. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to San Juan. Reviews last updated November 11, 2025.
See what other customers who have flown with Alaska Airlines, Southwest, and Delta from San Diego to San Juan have to say. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
Alaska Airlines
8.0
Very good
11,268 reviews

Crew

8.5

Entertainment

7.0

Boarding

8.1

Food

7.1

Overall

8.0

Comfort

7.8

Reviews

1 / 20
6.0
Good

Hannah,Aug 2025

SFO - SAN

Ticket said TSA pre check, but then the TSA agent said that Alaska Airlines has not actually entered the pre check information for the ticket, so I had to use regular security. During boarding, I have a disability and need to board early. The Alaska Airlines employee announced disability boarding, but then immediately announced 2 other groups to board, so I still had to fight the crowds. On the plane, the stewardess was brusk and rude. Seats were very uncomfortable, especially on lower back.
Alaska Airlines
8.0
Very good
11,268 reviews
Alaska Airlines
8.0
Very good
11,268 reviews

Crew

8.5

Entertainment

7.0

Boarding

8.1

Food

7.1

Overall

8.0

Comfort

7.8

Reviews

1 / 20
6.0
Good

Hannah,Aug 2025

SFO - SAN

Ticket said TSA pre check, but then the TSA agent said that Alaska Airlines has not actually entered the pre check information for the ticket, so I had to use regular security. During boarding, I have a disability and need to board early. The Alaska Airlines employee announced disability boarding, but then immediately announced 2 other groups to board, so I still had to fight the crowds. On the plane, the stewardess was brusk and rude. Seats were very uncomfortable, especially on lower back.
Southwest
8.0
Very good
4,235 reviews
Alaska Airlines
8.0
Very good
11,268 reviews

Crew

8.5

Entertainment

7.0

Boarding

8.1

Food

7.1

Overall

8.0

Comfort

7.8

Reviews

1 / 20
6.0
Good

Hannah,Aug 2025

SFO - SAN

Ticket said TSA pre check, but then the TSA agent said that Alaska Airlines has not actually entered the pre check information for the ticket, so I had to use regular security. During boarding, I have a disability and need to board early. The Alaska Airlines employee announced disability boarding, but then immediately announced 2 other groups to board, so I still had to fight the crowds. On the plane, the stewardess was brusk and rude. Seats were very uncomfortable, especially on lower back.
Delta
7.9
Good
8,007 reviews
Alaska Airlines
8.0
Very good
11,268 reviews

Crew

8.5

Entertainment

7.0

Boarding

8.1

Food

7.1

Overall

8.0

Comfort

7.8

Reviews

1 / 20
6.0
Good

Hannah,Aug 2025

SFO - SAN

Ticket said TSA pre check, but then the TSA agent said that Alaska Airlines has not actually entered the pre check information for the ticket, so I had to use regular security. During boarding, I have a disability and need to board early. The Alaska Airlines employee announced disability boarding, but then immediately announced 2 other groups to board, so I still had to fight the crowds. On the plane, the stewardess was brusk and rude. Seats were very uncomfortable, especially on lower back.
United Airlines
7.4
Good
9,012 reviews
Alaska Airlines
8.0
Very good
11,268 reviews

Crew

8.5

Entertainment

7.0

Boarding

8.1

Food

7.1

Overall

8.0

Comfort

7.8

Reviews

1 / 20
6.0
Good

Hannah,Aug 2025

SFO - SAN

Ticket said TSA pre check, but then the TSA agent said that Alaska Airlines has not actually entered the pre check information for the ticket, so I had to use regular security. During boarding, I have a disability and need to board early. The Alaska Airlines employee announced disability boarding, but then immediately announced 2 other groups to board, so I still had to fight the crowds. On the plane, the stewardess was brusk and rude. Seats were very uncomfortable, especially on lower back.
American Airlines
7.2
Good
11,045 reviews
Alaska Airlines
8.0
Very good
11,268 reviews

Crew

8.5

Entertainment

7.0

Boarding

8.1

Food

7.1

Overall

8.0

Comfort

7.8

Reviews

1 / 20
6.0
Good

Hannah,Aug 2025

SFO - SAN

Ticket said TSA pre check, but then the TSA agent said that Alaska Airlines has not actually entered the pre check information for the ticket, so I had to use regular security. During boarding, I have a disability and need to board early. The Alaska Airlines employee announced disability boarding, but then immediately announced 2 other groups to board, so I still had to fight the crowds. On the plane, the stewardess was brusk and rude. Seats were very uncomfortable, especially on lower back.

Related info for your journey

Find useful and relevant information for your journey from San Diego to San Juan. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly from for flights from San Diego to San Juan?

    San Diego (SAN) is the airport you will fly out of if you book a flight from San Diego to San Juan. You should not have trouble finding flights to San Juan from San Diego; the airport handles an average of 0 outbound flights to San Juan per day. You should also have plenty of airline options to choose from since 8 airlines have flights from the San Diego airport to San Juan. It is only a 2.6 mi journey to San Diego (SAN) from San Diego’s city center.

  • How long is the flight from San Diego to San Juan?

    There are many flights that can get you from San Diego to San Juan in 10h 43m. Fly via Delta, Southwest, or United Airlines to get the fastest option. There are 3304 mi between San Diego and San Juan. Both multi-stop and nonstop flights can be found to your destination and back.

  • What are the cheapest airlines flying from San Diego to San Juan round-trip?

    Cheapflights users have booked flights from San Diego to San Juan round-trip from $125. Other airlines that can offer you cheap pricing are Frontier, from $225, and Delta, from $278. These flights start at 75% lower than the current average price 3 months from now.

  • Where are the most common layover locations when flying from San Diego to San Juan?

    The most popular layover on flights from San Diego to San Juan is Dallas.

  • What are some popular things to do or see while on a layover in Dallas?

    If you're on a layover in Dallas and looking for things to do, consider visiting American Airlines Center, Dallas World Aquarium, or Dos Equis Pavilion. American Airlines Center, Dallas World Aquarium, and Dos Equis Pavilion can be visited by traveling about 15.0 mi, 15.5 mi, and 18.3 mi respectively from Dallas/Fort Worth. Those on a layover in Dallas in need of a rental car can book one at Dallas/Fort Worth for about $57.

  • Where are the least popular layover locations for San Diego to San Juan flights?

    The least popular layover on flights from San Diego to San Juan is Miami.

  • Can I find deals for flights from San Diego to San Juan that include hotel bookings?

    Yes. In addition to deals on San Diego to San Juan flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from San Diego to San Juan?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from San Diego to San Juan.

  • Can I find deals for business class flights from San Diego to San Juan?

    Yes. Cheapflights offers flight deals from San Diego to San Juan by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from San Diego to San Juan?

    Currently, April is the cheapest month in which you can book a flight from San Diego to San Juan (average of $128). Flying from San Diego to San Juan in August is currently the most expensive (average of $366). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

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Top 8 airlines flying from San Diego to San Juan

Discover the top 8 airlines that operate flights from San Diego to San Juan. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated November 11, 2025.
AirlineCheapestAverageFlexibilityOn-time
Spirit AirlinesCheapest$125Average$354FlexibilityNo cancel feeOn-time65%
FrontierCheapest$225Average$453FlexibilityNo cancel feeOn-time62%
DeltaCheapest$278Average$545FlexibilityNo cancel feeOn-timeN/A
United AirlinesCheapest$296Average$485FlexibilityNo cancel feeOn-time69%
JetBlueCheapest$314Average$485FlexibilityNo cancel feeOn-time62%
American AirlinesCheapest$319Average$529FlexibilityNo cancel feeOn-time71%
SouthwestCheapest$382Average$601FlexibilityNo cancel feeOn-time63%
Alaska AirlinesCheapest$477Average$585FlexibilityNo cancel feeOn-time75%

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