Houston

$104+ Cheap flights from San Juan to Houston

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 3/16. Fares are subject to change and may not be available on all flights or dates of travel.
SJU — HOU
Mar 11 — Mar 181
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Cheapflights Tip: The best prices from San Juan to Houston are usually found in October or April, booked 50 days in advance, depart on a Monday or Tuesday and return on a Wednesday

Cheap flight deals from San Juan to Houston

Cheapest flights from San Juan to Houston
Explore the most affordable flight options available from San Juan to Houston. Find the lowest fares from popular airlines and budget airlines, with prices last updated on February 9, 2026.

This Kiwi.com deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 5/1211:07 am
SJU
-
IAH
1 stop13h 44m
Spirit Airlines
Wed 5/139:24 am
IAH
-
SJU
1 stop7h 34m
Spirit Airlines
Deal found 2/6$169
This Travelocity deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Travelocity is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 2/246:00 am
SJU
-
IAH
1 stop7h 11m
Multiple Airlines
Tue 3/37:59 pm
IAH
-
SJU
1 stop11h 55m
Multiple Airlines
Deal found 2/8$181
This Kiwi.com deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 5/116:30 am
SJU
-
IAH
1 stop12h 34m
Multiple Airlines
Tue 5/129:24 am
IAH
-
SJU
1 stop7h 34m
Multiple Airlines
Deal found 2/6$182
This Cheapflightsfares deal was found by Cheapflights users on 2/9. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Cheapflightsfares is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 2/144:36 pm
SJU
-
IAH
1 stop9h 42m
Spirit Airlines
Sat 2/214:20 pm
IAH
-
SJU
1 stop15h 57m
Spirit Airlines
Deal found 2/9$187
This Cheapflightsfares deal was found by Cheapflights users on 2/9. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Cheapflightsfares is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 2/144:36 pm
SJU
-
IAH
1 stop9h 42m
Spirit Airlines
Thu 2/196:00 am
IAH
-
SJU
1 stop6h 22m
Spirit Airlines
Deal found 2/9$188
This Cheapflightsfares deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Cheapflightsfares is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 3/1711:03 am
SJU
-
IAH
1 stop13h 46m
Spirit Airlines
Tue 3/245:45 am
IAH
-
SJU
1 stop12h 10m
Spirit Airlines
Deal found 2/6$189
This CheapOair deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure CheapOair is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 4/1611:07 am
SJU
-
IAH
1 stop7h 56m
Spirit Airlines
Tue 4/215:23 pm
IAH
-
SJU
1 stop23h 35m
Spirit Airlines
Deal found 2/6$190
This Cheapflightsfares deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Cheapflightsfares is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 2/124:36 pm
SJU
-
IAH
1 stop9h 42m
Spirit Airlines
Mon 2/169:40 pm
IAH
-
SJU
1 stop10h 37m
Spirit Airlines
Deal found 2/8$191
This Cheapflightsfares deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Cheapflightsfares is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 3/1711:03 am
SJU
-
IAH
1 stop13h 46m
Spirit Airlines
Sat 3/217:35 am
IAH
-
SJU
1 stop10h 20m
Spirit Airlines
Deal found 2/6$192
This Kiwi.com deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 4/2310:53 am
SJU
-
IAH
1 stop27h 46m
Multiple Airlines
Sat 5/24:22 pm
IAH
-
SJU
1 stop19h 11m
Multiple Airlines
Deal found 2/7$194
This Expedia deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Expedia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 2/2611:52 am
SJU
-
IAH
1 stop14h 07m
Multiple Airlines
Mon 3/28:18 pm
IAH
-
SJU
1 stop11h 36m
Multiple Airlines
Deal found 2/7$195
This Southwest deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Southwest is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 5/135:35 am
SJU
-
HOU
2 stops9h 25m
Southwest
Wed 5/134:55 pm
HOU
-
SJU
1 stop5h 45m
Southwest
Deal found 2/6$359

Find flight deals from San Juan to Houston

Discover tips and strategies to find the most affordable flight options for your journey from San Juan (PR1) to Houston (HO1). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated February 9, 2026.

Round-trip from

$169
(Kiwi.com)

One-way from

$104
(Trip.com)

Popular in

February

Cheapest in

October

Average price

$468
From San Juan to Houston
One-way flight from San Juan to Houston
Highest demand for flights based on searches. 10% potential increase in price ($38 potential increase over avg. RT price).
Cheapest flight prices on average. 3% potential price decrease ($12 potential savings vs. average RT price).
Average for round-trip flights in February 2026

Cheapflights Fare Finder

 
Customize your flight search to find flights from San Juan to Houston that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated February 9, 2026.
Use the filters below to find and compare flights from San Juan to Houston that are best for you.

Fly from

San Juan

Fly to

Houston

Route

Depart

Return

Price

San JuanHouston

SJU - IAH

SJUIAH

San Juan Luis Munoz Marin Intl

Sun 3/8

5:00 am-11:11 am

1 stop7h 11m

Houston George Bush Intcntl

Sun 3/15

4:30 pm-6:55 pm

2 stops25h 25m

$319

San JuanHouston

SJU - IAH

SJUIAH

San Juan Luis Munoz Marin Intl

Tue 4/21

1:00 am-10:55 am

1 stop10h 55m

Houston George Bush Intcntl

Sun 5/3

3:03 pm-8:38 pm

Nonstop4h 35m

$360

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Sun 5/3

12:50 pm-9:50 pm

1 stop10h 00m

Houston Hobby

Sun 5/10

5:05 am-4:30 pm

1 stop10h 25m

$364

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Wed 4/15

2:00 pm-7:45 pm

1 stop6h 45m

Houston Hobby

Tue 4/21

8:10 am-9:05 pm

1 stop11h 55m

$364

San JuanHouston

SJU - IAH

SJUIAH

San Juan Luis Munoz Marin Intl

Wed 4/15

7:00 am-10:53 am

Nonstop4h 53m

Houston George Bush Intcntl

Tue 4/21

3:03 pm-8:38 pm

Nonstop4h 35m

$381

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Thu 5/7

5:05 am-1:45 pm

2 stops9h 40m

Houston Hobby

Fri 5/8

2:40 pm-11:55 pm

2 stops8h 15m

$390

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Thu 3/5

6:30 am-1:25 pm

2 stops8h 55m

Houston Hobby

Thu 3/12

12:05 pm-11:35 pm

1 stop10h 30m

$400

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Mon 4/27

5:05 am-2:45 pm

2 stops10h 40m

Houston Hobby

Sat 5/2

2:00 pm-11:40 pm

1 stop8h 40m

$404

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Sat 4/25

6:15 am-4:28 pm

1 stop11h 13m

Houston Hobby

Mon 4/27

6:00 am-4:23 pm

1 stop9h 23m

$411

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Thu 5/7

5:05 am-11:50 am

1 stop7h 45m

Houston Hobby

Thu 5/7

2:40 pm-11:55 pm

2 stops8h 15m

$413

Flights are sorted by cheapest round-trip flights first.

Deals found on 2/8

Showing 1-10 of 38 results
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Best time to book a flight from San Juan to Houston

Have a flexible travel schedule? Discover the best time to fly to Houston from San Juan with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from San Juan to Houston

How far ahead should I book a flight from San Juan to Houston?

Use this chart to determine the optimal time to book a round-trip flight from San Juan to Houston. Price data was last updated on February 6, 2026.

To ensure you get the cheapest price possible for a flight from San Juan to Houston, you should look to book at least 47 days in advance of your intended travel date. The price of your flight may increase if you delay and leave booking until a week or so before departure.

What is the cheapest month to book a flight from San Juan to Houston?

Currently, March is the cheapest month in which you can book a flight from San Juan to Houston (average of $83). Flying from San Juan to Houston in September is currently the most expensive (average of $172). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from SJU to HOU?

Find hourly flight availability from San Juan to Houston. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated February 9, 2026.

It’s optimal to fly from San Juan to Houston in the evening. By choosing this option you can save up to 34% on the cost of your flight, compared to a flight at noon.

What is the cheapest day to fly from San Juan to Houston?

Use this chart to determine the cheapest time to fly round-trip from San Juan to Houston. Price data was last updated on February 7, 2026.

Travelers seeking maximum savings on their San Juan to Houston flight should consider departing on Thursday evenings when fares are most often at their lowest. Sunday at noon flights should be avoided if possible as fares are typically the most expensive at this time.

How often are flights from San Juan to Houston delayed?

About 10% of weekly flights between San Juan and Houston have experienced delays in the past year, with the average delay time being 158 minutes.

What is the most punctual flight time for San Juan to Houston flights?

Historically, flights departing at night are less likely to be delayed, whereas flights leaving in the evening tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Friday tends to have the lowest number of delays on this route, whereas Thursday has historically faced a higher average of delays compared to other days of the week.

Which airline has the best punctuality record on San Juan to Houston flights?

Over the last year, United Airlines have had the lowest number of delays on this route, with just 9% of flights being delayed.

Reviews of airlines servicing Houston

Get insights into the airlines that provide service to Houston. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Houston. Reviews last updated February 9, 2026.
Peruse reviews from past customers who have flown with Southwest, United Airlines, and American Airlines from San Juan to Houston to help guide your decision. You can also see how each airline stacks up in terms of entertainment options, comfort, food, crew/service, and boarding process.

Overall

8.0

Crew

8.6

Entertainment

7.5

Comfort

8.0

Food

7.0

Boarding

8.1

Reviews

1 / 20
2.0
Mediocre

Thomas,Dec 2025

SEA - DEN

Plane two hours late in leaving 1:00 pm west coat time got home next day at 2:45am most car rental places are closed and don’t open till 5am

Overall

8.0

Crew

8.6

Entertainment

7.5

Comfort

8.0

Food

7.0

Boarding

8.1

Reviews

1 / 20
2.0
Mediocre

Thomas,Dec 2025

SEA - DEN

Plane two hours late in leaving 1:00 pm west coat time got home next day at 2:45am most car rental places are closed and don’t open till 5am

Overall

8.0

Crew

8.6

Entertainment

7.5

Comfort

8.0

Food

7.0

Boarding

8.1

Reviews

1 / 20
2.0
Mediocre

Thomas,Dec 2025

SEA - DEN

Plane two hours late in leaving 1:00 pm west coat time got home next day at 2:45am most car rental places are closed and don’t open till 5am

Overall

8.0

Crew

8.6

Entertainment

7.5

Comfort

8.0

Food

7.0

Boarding

8.1

Reviews

1 / 20
2.0
Mediocre

Thomas,Dec 2025

SEA - DEN

Plane two hours late in leaving 1:00 pm west coat time got home next day at 2:45am most car rental places are closed and don’t open till 5am

Overall

8.0

Crew

8.6

Entertainment

7.5

Comfort

8.0

Food

7.0

Boarding

8.1

Reviews

1 / 20
2.0
Mediocre

Thomas,Dec 2025

SEA - DEN

Plane two hours late in leaving 1:00 pm west coat time got home next day at 2:45am most car rental places are closed and don’t open till 5am

Overall

8.0

Crew

8.6

Entertainment

7.5

Comfort

8.0

Food

7.0

Boarding

8.1

Reviews

1 / 20
2.0
Mediocre

Thomas,Dec 2025

SEA - DEN

Plane two hours late in leaving 1:00 pm west coat time got home next day at 2:45am most car rental places are closed and don’t open till 5am

Related info for your journey

Find useful and relevant information for your journey from San Juan to Houston. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.
  • How long is the flight from San Juan to Houston?

    Departing from San Juan to Houston will take you 7h 11m. The distance from San Juan to Houston is about 2004 mi. When browsing for deals, the options you’ll see will be for both nonstop flights and flights with stops.

  • What are the cheapest airlines flying from San Juan to Houston round-trip?

    Cheapflights users have booked flights from San Juan to Houston round-trip from $79. Other airlines that can offer you cheap pricing are Delta, from $108, and Frontier, from $126. Spirit Airlines is currently priced 76% below the average price you’ll pay for this route.

  • What are the cheapest airlines to fly from San Juan to Houston one-way?

    The cheapest airlines for a one-way flight from San Juan to Houston are Spirit Airlines ($58), American Airlines ($88), and United Airlines ($88).

  • What are the cheapest flights from San Juan to Houston?

    Looking at all options, your cheapest flight can be booked for $133. While the most popular route (San Juan Luis Munoz Marin Intl - Houston Hobby) can be booked for $181 on average, our data indicates $430 when flying from San Juan to Houston.

  • Can I find deals for flights from San Juan to Houston that include hotel bookings?

    Yes. In addition to deals on San Juan to Houston flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from San Juan to Houston?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from San Juan to Houston.

  • Can I find deals for business class flights from San Juan to Houston?

    Yes. Cheapflights offers flight deals from San Juan to Houston by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from San Juan to Houston?

    Currently, March is the cheapest month in which you can book a flight from San Juan to Houston (average of $83). Flying from San Juan to Houston in September is currently the most expensive (average of $172). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

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Top 6 airlines flying from San Juan to Houston

Discover the top 6 airlines that operate flights from San Juan to Houston. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated February 9, 2026.
AirlineCheapestAverageFlexibilityOn-time
Spirit AirlinesCheapest$79Average$225FlexibilityNo cancel feeOn-time65%
DeltaCheapest$108Average$202FlexibilityNo cancel feeOn-timeN/A
FrontierCheapest$126Average$416FlexibilityNo cancel feeOn-time62%
United AirlinesCheapest$203Average$448FlexibilityNo cancel feeOn-time69%
American AirlinesCheapest$210Average$390FlexibilityNo cancel feeOn-time71%
SouthwestCheapest$326Average$505FlexibilityNo cancel feeOn-time63%

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