Tokyo

$580+ Cheap flights from San Juan to Tokyo (TYO)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 10/14. Fares are subject to change and may not be available on all flights or dates of travel.
SJU — TYO
Jul 6 — Jul 131
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Cheap flight deals from San Juan to Tokyo

Cheapest flights from San Juan to Tokyo
Explore the most affordable flight options available from San Juan to Tokyo. Find the lowest fares from popular airlines and budget airlines, with prices last updated on June 6, 2026.

This Kiwi.com deal was found by Cheapflights users on 6/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 9/16:11 pm
SJU
-
NRT
1 stop31h 59m
Multiple Airlines
Wed 9/911:30 am
NRT
-
SJU
2 stops49h 08m
Multiple Airlines
Deal found 6/5$1,253
This Kiwi.com deal was found by Cheapflights users on 6/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 9/26:11 pm
SJU
-
NRT
1 stop31h 59m
Multiple Airlines
Wed 9/3011:30 am
NRT
-
SJU
2 stops38h 46m
Multiple Airlines
Deal found 6/4$1,257
This FlightHub deal was found by Cheapflights users on 6/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 9/96:00 am
SJU
-
HND
2 stops42h 55m
Multiple Airlines
Wed 9/304:20 pm
HND
-
SJU
2 stops40h 12m
Multiple Airlines
Deal found 6/6$1,260
This Priceline deal was found by Cheapflights users on 6/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Priceline is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 9/87:50 pm
SJU
-
HND
2 stops29h 05m
Multiple Airlines
Tue 9/224:20 pm
HND
-
SJU
2 stops36h 36m
Multiple Airlines
Deal found 6/1$1,296
This Priceline deal was found by Cheapflights users on 6/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Priceline is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 9/87:50 pm
SJU
-
NRT
2 stops28h 50m
Multiple Airlines
Tue 9/226:30 pm
NRT
-
SJU
2 stops34h 26m
Multiple Airlines
Deal found 6/1$1,296
This FlightHub deal was found by Cheapflights users on 6/3. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 9/186:00 am
SJU
-
HND
2 stops42h 55m
Multiple Airlines
Sun 9/274:20 pm
HND
-
SJU
2 stops36h 36m
Multiple Airlines
Deal found 6/3$1,300
This FlightHub deal was found by Cheapflights users on 6/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 9/29:10 pm
SJU
-
HND
2 stops35h 25m
Multiple Airlines
Wed 9/304:20 pm
HND
-
SJU
2 stops40h 12m
Multiple Airlines
Deal found 6/2$1,319
This FlightHub deal was found by Cheapflights users on 6/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 9/286:00 am
SJU
-
NRT
2 stops45h 05m
Multiple Airlines
Mon 10/53:45 pm
NRT
-
SJU
3 stops34h 49m
Multiple Airlines
Deal found 6/6$1,323
This FlightHub deal was found by Cheapflights users on 6/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 9/19:10 pm
SJU
-
HND
2 stops35h 25m
Multiple Airlines
Wed 9/94:20 pm
HND
-
SJU
2 stops40h 12m
Multiple Airlines
Deal found 6/5$1,335
This FlightHub deal was found by Cheapflights users on 6/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 9/16:30 pm
SJU
-
NRT
2 stops31h 00m
Multiple Airlines
Thu 9/2410:00 pm
NRT
-
SJU
2 stops34h 32m
Multiple Airlines
Deal found 6/4$1,339
This Justfly.com deal was found by Cheapflights users on 6/3. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Justfly.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 9/217:00 pm
SJU
-
NRT
2 stops29h 40m
Multiple Airlines
Mon 10/52:50 pm
NRT
-
SJU
2 stops38h 06m
Multiple Airlines
Deal found 6/3$1,349
This FlightHub deal was found by Cheapflights users on 6/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 10/226:00 am
SJU
-
NRT
2 stops42h 40m
Multiple Airlines
Sat 10/314:45 pm
NRT
-
SJU
2 stops34h 51m
Multiple Airlines
Deal found 6/2$1,362

Find flight deals from San Juan to Tokyo

Discover tips and strategies to find the most affordable flight options for your journey from San Juan (PR1) to Tokyo (TYO). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated June 6, 2026.

Round-trip from

$1,253
(Kiwi.com)

One-way from

$801
(Qatar Airways)

Popular in

December

Cheapest in

November

Average price

$1,682
From San Juan to Tokyo (TYO)
One-way flight from San Juan to Tokyo (TYO)
Highest demand for flights based on searches. 10% potential increase in price ($174 potential increase over avg. RT price).
Cheapest flight prices on average. 2% potential price decrease ($40 potential savings vs. average RT price).
Average for round-trip flights in June 2026

Cheapflights Fare Finder

 
Customize your flight search to find flights from San Juan to Tokyo that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated June 6, 2026.
Use the filters below to find and compare flights from San Juan to Tokyo that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

San JuanTokyo

SJU - HND

SJUHND

San Juan Luis Munoz Marin Intl

Sun 11/22

5:50 pm-4:50 pm

1 stop34h 00m

Tokyo Haneda

Fri 12/11

7:40 pm-6:25 pm

2 stops35h 45m

$1,412

San JuanTokyo

SJU - NRT

SJUNRT

San Juan Luis Munoz Marin Intl

Sat 10/3

1:00 am-2:30 pm

1 stop24h 30m

Tokyo Narita

Wed 10/14

5:25 pm-11:50 pm

1 stop19h 25m

$1,412
Quickest round-trip

San JuanTokyo

SJU - HND

SJUHND

San Juan Luis Munoz Marin Intl

Mon 9/21

7:00 am-3:25 pm

1 stop19h 25m

Tokyo Haneda

Mon 10/5

10:25 am-8:38 pm

1 stop23h 13m

$1,462

San JuanTokyo

SJU - HND

SJUHND

San Juan Luis Munoz Marin Intl

Thu 10/1

7:00 am-7:00 pm

2 stops23h 00m

Tokyo Haneda

Wed 10/14

10:25 am-8:38 pm

1 stop23h 13m

$1,462

San JuanTokyo

SJU - HND

SJUHND

San Juan Luis Munoz Marin Intl

Mon 9/28

6:45 pm-1:35 pm

1 stop29h 50m

Tokyo Haneda

Mon 10/5

10:25 am-8:38 pm

1 stop23h 13m

$1,462

San JuanTokyo

SJU - NRT

SJUNRT

San Juan Luis Munoz Marin Intl

Mon 9/14

1:00 am-2:30 pm

1 stop24h 30m

Tokyo Narita

Sat 10/3

5:25 pm-11:50 pm

1 stop19h 25m

$1,462

San JuanTokyo

SJU - HND

SJUHND

San Juan Luis Munoz Marin Intl

Sat 11/7

5:50 pm-4:50 pm

1 stop34h 00m

Tokyo Haneda

Thu 11/26

12:50 am-1:41 pm

2 stops25h 51m

$1,463

San JuanTokyo

SJU - HND

SJUHND

San Juan Luis Munoz Marin Intl

Fri 11/13

2:05 am-4:50 am

2 stops37h 45m

Tokyo Haneda

Sat 12/5

9:05 pm-2:40 pm

2 stops30h 35m

$1,467

San JuanTokyo

SJU - NRT

SJUNRT

San Juan Luis Munoz Marin Intl

Mon 11/2

7:45 am-3:00 pm

2 stops42h 15m

Tokyo Narita

Sat 11/21

5:30 pm-6:25 pm

2 stops37h 55m

$1,467

San JuanTokyo

SJU - NRT

SJUNRT

San Juan Luis Munoz Marin Intl

Sun 9/20

1:00 am-2:30 pm

1 stop24h 30m

Tokyo Narita

Mon 10/5

4:30 pm-11:57 am

2 stops32h 27m

$1,467

Flights are sorted by cheapest round-trip flights first.

Deals found on 6/5

Showing 1-10 of 38 resultsSorted by cheapest first
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Best time to book a flight from San Juan to Tokyo

Have a flexible travel schedule? Discover the best time to fly to Tokyo from San Juan with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from San Juan to Tokyo

What is the cheapest month to book a flight from San Juan to Tokyo?

Currently, October is the cheapest month in which you can book a flight from San Juan to Tokyo (average of $456). Flying from San Juan to Tokyo in July is currently the most expensive (average of $1,252). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

How much does it cost to fly round-trip from San Juan to Tokyo?

How far ahead should I book a flight from San Juan to Tokyo?

Booking 19 days in advance of your planned departure date is, on average, the best time to get cheap flights from San Juan to Tokyo. The general trend is that the closer you book to the departure date, the more expensive your flight will be.

Reviews of airlines servicing Tokyo

Get insights into the airlines that provide service to Tokyo. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Tokyo. Reviews last updated June 6, 2026.
Read reviews from past customers who have flown Japan Airlines,Delta, andUnited Airlines from San Juan to Tokyo. Users can see the overall rating for each airline as well as how each is rated in terms of entertainment options, comfort, food, crew/service, and boarding process.

Boarding

8.4

Crew

8.7

Entertainment

7.8

Overall

8.3

Food

7.7

Comfort

8.2

Reviews

1 / 20
10.0
Excellent

Anonymous,Nov 2025

BKK - NRT

Everything was was a great experience, the staff was very friendly and always had a smile on the face.

Boarding

8.4

Crew

8.7

Entertainment

7.8

Overall

8.3

Food

7.7

Comfort

8.2

Reviews

1 / 20
10.0
Excellent

Anonymous,Nov 2025

BKK - NRT

Everything was was a great experience, the staff was very friendly and always had a smile on the face.

Boarding

8.4

Crew

8.7

Entertainment

7.8

Overall

8.3

Food

7.7

Comfort

8.2

Reviews

1 / 20
10.0
Excellent

Anonymous,Nov 2025

BKK - NRT

Everything was was a great experience, the staff was very friendly and always had a smile on the face.

Boarding

8.4

Crew

8.7

Entertainment

7.8

Overall

8.3

Food

7.7

Comfort

8.2

Reviews

1 / 20
10.0
Excellent

Anonymous,Nov 2025

BKK - NRT

Everything was was a great experience, the staff was very friendly and always had a smile on the face.

Boarding

8.4

Crew

8.7

Entertainment

7.8

Overall

8.3

Food

7.7

Comfort

8.2

Reviews

1 / 20
10.0
Excellent

Anonymous,Nov 2025

BKK - NRT

Everything was was a great experience, the staff was very friendly and always had a smile on the face.

Boarding

8.4

Crew

8.7

Entertainment

7.8

Overall

8.3

Food

7.7

Comfort

8.2

Reviews

1 / 20
10.0
Excellent

Anonymous,Nov 2025

BKK - NRT

Everything was was a great experience, the staff was very friendly and always had a smile on the face.

Related info for your journey

Find useful and relevant information for your journey from San Juan to Tokyo. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.
  • What are the cheapest airlines flying from San Juan to Tokyo round-trip?

    According to our current data, United Airlines ($1,062), Delta ($1,114), and American Airlines ($1,233) offers the cheapest pricing from San Juan to Tokyo. Users have found that United Airlines is 31% cheaper than the other options available to this destination.

  • Can I find deals for flights from San Juan to Tokyo that include hotel bookings?

    Yes. In addition to deals on San Juan to Tokyo flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from San Juan to Tokyo?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from San Juan to Tokyo.

  • Can I find deals for business class flights from San Juan to Tokyo?

    Yes. Cheapflights offers flight deals from San Juan to Tokyo by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from San Juan to Tokyo?

    Currently, October is the cheapest month in which you can book a flight from San Juan to Tokyo (average of $456). Flying from San Juan to Tokyo in July is currently the most expensive (average of $1,252). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Traveling to a place near Tokyo?

Book flights to Tokyo if you plan to visit one of these locations
Chiba
Karuizawa
Urayasu
Izu
Yokosuka
Yamanouchi
Odawara
Atami
Numazu
Hakone
Kawasaki

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Top 3 airlines flying from San Juan to Tokyo

Discover the top 3 airlines that operate flights from San Juan to Tokyo. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated June 6, 2026.
AirlineCheapestAverageFlexibilityOn-time
United AirlinesCheapest$1,062Average$1,384FlexibilityNo cancel feeOn-time69%
DeltaCheapest$1,114Average$1,641FlexibilityNo cancel feeOn-timeN/A
American AirlinesCheapest$1,233Average$1,628FlexibilityNo cancel feeOn-time71%

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