$90+ Cheap flights from Houston to San Juan
This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 2/28. Fares are subject to change and may not be available on all flights or dates of travel.
HOU — SJU
Mar 11 — Mar 181
1 adult, Economy
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Find cheap flights from Houston to San Juan with Cheapflights
1. Tell us where you want to go
Enter your travel information like dates, passengers, trip type (one-way or round trip), and preferred cabin class then click “Find deals”2. Select your favorite providers
We find the providers serving your travel needs. Choose up to four travel providers to compare side-by-side for flights, hotels, or car rentals.3. Compare prices and book
Review each provider’s pricing and select the best option for you! Book through your favorite provider’s website for a seamless experience.Cheapflights Tip: The best prices from Houston to San Juan are usually found in April or February, booked 9 days in advance, depart on a Wednesday or Monday and return on a Monday
Cheap flight deals from Houston to San Juan
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Best
Last-minute
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Cheapest flights from Houston to San JuanExplore the most affordable flight options available from Houston to San Juan. Find the lowest fares from popular airlines and budget airlines, with prices last updated on February 9, 2026.
Explore the most affordable flight options available from Houston to San Juan. Find the lowest fares from popular airlines and budget airlines, with prices last updated on February 9, 2026.
This CheapOair deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure CheapOair is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 2/288:18 pm
IAH
- SJU
1 stop15h 09m
Frontier
Mon 3/23:53 am
SJU
- IAH
1 stop17h 11m
Frontier
Deal found 2/7![Frontier logo]()
$185
This CheapOair deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure CheapOair is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 2/247:21 am
IAH
- SJU
1 stop6h 10m
Multiple Airlines
Mon 3/23:53 am
SJU
- IAH
1 stop17h 11m
Multiple Airlines
Deal found 2/7![Multiple Airlines logo]()
$186
This Cheapflightsfares deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Cheapflightsfares is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 2/239:40 pm
IAH
- SJU
1 stop10h 37m
Spirit Airlines
Thu 2/2611:52 am
SJU
- IAH
1 stop14h 07m
Spirit Airlines
Deal found 2/7![Spirit Airlines logo]()
$187
This Priceline deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Priceline is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 2/248:18 pm
IAH
- SJU
1 stop26h 25m
Frontier
Mon 3/23:53 am
SJU
- IAH
1 stop17h 11m
Frontier
Deal found 2/8![Frontier logo]()
$188
This CheapOair deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure CheapOair is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 2/2812:16 pm
IAH
- SJU
1 stop8h 53m
Multiple Airlines
Mon 3/23:53 am
SJU
- IAH
1 stop17h 11m
Multiple Airlines
Deal found 2/6![Multiple Airlines logo]()
$189
This CheapOair deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure CheapOair is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 3/35:24 pm
IAH
- SJU
1 stop23h 34m
Spirit Airlines
Fri 3/611:52 am
SJU
- IAH
1 stop14h 07m
Spirit Airlines
Deal found 2/6![Spirit Airlines logo]()
$190
This Kiwi.com deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 4/285:23 pm
IAH
- SJU
1 stop23h 07m
Multiple Airlines
Sat 5/28:41 am
SJU
- IAH
1 stop16h 10m
Multiple Airlines
Deal found 2/7![Multiple Airlines logo]()
$191
This Cheapflightsfares deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Cheapflightsfares is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 2/215:15 am
IAH
- SJU
1 stop11h 34m
Spirit Airlines
Wed 2/2511:52 am
SJU
- IAH
1 stop14h 07m
Spirit Airlines
Deal found 2/7![Spirit Airlines logo]()
$192
This Kiwi.com deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 5/64:22 pm
IAH
- SJU
1 stop19h 11m
Multiple Airlines
Wed 5/1310:53 am
SJU
- IAH
1 stop13h 58m
Multiple Airlines
Deal found 2/8![Multiple Airlines logo]()
$194
This Priceline deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Priceline is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 2/208:18 pm
IAH
- SJU
1 stop14h 39m
Multiple Airlines
Tue 2/246:00 am
SJU
- IAH
1 stop7h 11m
Multiple Airlines
Deal found 2/6![Multiple Airlines logo]()
$195
This Kiwi.com deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 4/118:02 am
IAH
- SJU
1 stop11h 47m
Multiple Airlines
Mon 4/1311:03 am
SJU
- IAH
1 stop13h 46m
Multiple Airlines
Deal found 2/6![Multiple Airlines logo]()
$196
This Southwest deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Southwest is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 5/610:25 am
HOU
- SJU
2 stops9h 40m
Southwest
Wed 5/135:35 am
SJU
- HOU
1 stop11h 35m
Southwest
Deal found 2/8![Southwest logo]()
$364
Best flights from Houston to San JuanDiscover carefully curated flight deals from Houston to San Juan that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated February 9, 2026.
Discover carefully curated flight deals from Houston to San Juan that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated February 9, 2026.
This CheapOair deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure CheapOair is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 5/19:27 am
IAH
- SJU
1 stop23h 35m
Spirit Airlines
Mon 5/49:49 pm
SJU
- IAH
2 stops20h 19m
Spirit Airlines
Deal found 2/8![Spirit Airlines logo]()
$300
This United Airlines deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 4/273:03 pm
IAH
- SJU
Nonstop4h 35m
United Airlines
Fri 5/14:55 pm
SJU
- IAH
1 stop8h 50m
United Airlines
Deal found 2/7![United Airlines logo]()
$360
This Southwest deal was found by Cheapflights users on 2/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Southwest is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 5/95:15 am
HOU
- SJU
1 stop8h 25m
Southwest
Mon 5/118:40 pm
SJU
- HOU
1 stop12h 25m
Southwest
Deal found 2/5![Southwest logo]()
$364
This Delta deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Delta is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 5/61:31 pm
HOU
- SJU
1 stop8h 42m
Delta
Wed 5/1312:50 pm
SJU
- HOU
1 stop11h 18m
Delta
Deal found 2/8![Delta logo]()
$364
This Southwest deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Southwest is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 5/22:00 pm
HOU
- SJU
1 stop8h 40m
Southwest
Tue 5/55:35 am
SJU
- HOU
2 stops10h 25m
Southwest
Deal found 2/6![Southwest logo]()
$364
This United Airlines deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 5/103:03 pm
IAH
- SJU
Nonstop4h 35m
United Airlines
Sat 5/302:05 am
SJU
- IAH
Nonstop4h 56m
United Airlines
Deal found 2/7![United Airlines logo]()
$381
This Southwest deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Southwest is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 5/610:25 am
HOU
- SJU
2 stops9h 40m
Southwest
Wed 5/135:35 am
SJU
- HOU
2 stops9h 25m
Southwest
Deal found 2/8![Southwest logo]()
$364
This United Airlines deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 3/313:03 pm
IAH
- SJU
Nonstop4h 35m
United Airlines
Tue 4/77:00 am
SJU
- IAH
Nonstop4h 53m
United Airlines
Deal found 2/6![United Airlines logo]()
$407
This Southwest deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Southwest is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 5/611:00 am
HOU
- SJU
1 stop10h 40m
Southwest
Sun 5/106:25 am
SJU
- HOU
2 stops10h 35m
Southwest
Deal found 2/6![Southwest logo]()
$390
This United Airlines deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 4/83:03 pm
IAH
- SJU
Nonstop4h 35m
United Airlines
Wed 4/157:00 am
SJU
- IAH
Nonstop4h 53m
United Airlines
Deal found 2/7![United Airlines logo]()
$407
This Southwest deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Southwest is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 3/34:15 pm
HOU
- SJU
1 stop6h 20m
Southwest
Fri 3/611:15 am
SJU
- HOU
1 stop7h 40m
Southwest
Deal found 2/7![Southwest logo]()
$390
This United Airlines deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 3/23:04 pm
IAH
- SJU
Nonstop4h 22m
United Airlines
Tue 3/106:40 am
SJU
- IAH
Nonstop5h 06m
United Airlines
Deal found 2/7![United Airlines logo]()
$422
This Southwest deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Southwest is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 4/81:00 pm
HOU
- SJU
2 stops9h 40m
Southwest
Wed 4/155:35 am
SJU
- HOU
2 stops9h 25m
Southwest
Deal found 2/7![Southwest logo]()
$390
This Southwest deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Southwest is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 5/210:25 am
HOU
- SJU
Nonstop4h 10m
Southwest
Wed 5/65:05 am
SJU
- HOU
1 stop15h 05m
Southwest
Deal found 2/6![Southwest logo]()
$400
This United Airlines deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 2/2410:10 am
IAH
- SJU
Nonstop4h 26m
United Airlines
Tue 3/37:40 am
SJU
- IAH
Nonstop5h 06m
United Airlines
Deal found 2/8![United Airlines logo]()
$440
This Southwest deal was found by Cheapflights users on 2/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Southwest is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 4/302:45 pm
HOU
- SJU
1 stop7h 40m
Southwest
Sun 5/312:50 pm
SJU
- HOU
1 stop10h 00m
Southwest
Deal found 2/5![Southwest logo]()
$404
This United Airlines deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 5/510:03 am
IAH
- SJU
Nonstop4h 39m
United Airlines
Fri 5/81:00 am
SJU
- IAH
1 stop11h 00m
United Airlines
Deal found 2/7![United Airlines logo]()
$450
This United Airlines deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 5/59:47 am
IAH
- SJU
1 stop9h 47m
United Airlines
Sun 5/107:00 am
SJU
- IAH
Nonstop4h 53m
United Airlines
Deal found 2/8![United Airlines logo]()
$450
This Southwest deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Southwest is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 4/1111:30 am
HOU
- SJU
1 stop6h 35m
Southwest
Sat 4/186:25 am
SJU
- HOU
1 stop8h 15m
Southwest
Deal found 2/6![Southwest logo]()
$416
This United Airlines deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 2/263:04 pm
IAH
- SJU
Nonstop4h 22m
United Airlines
Thu 3/57:40 am
SJU
- IAH
Nonstop5h 06m
United Airlines
Deal found 2/6![United Airlines logo]()
$452
This United Airlines deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 3/1411:59 pm
IAH
- SJU
Nonstop4h 12m
United Airlines
Tue 3/174:50 pm
SJU
- IAH
1 stop8h 40m
United Airlines
Deal found 2/8![United Airlines logo]()
$453
This United Airlines deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 3/113:04 pm
IAH
- SJU
Nonstop4h 22m
United Airlines
Tue 3/174:50 pm
SJU
- IAH
1 stop8h 40m
United Airlines
Deal found 2/8![United Airlines logo]()
$458
Last-minute flights from Houston to San JuanDiscover last-minute flight deals from Houston to San Juan. Data last updated February 9, 2026 and is based on user searches.
Discover last-minute flight deals from Houston to San Juan. Data last updated February 9, 2026 and is based on user searches.
This Priceline deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Priceline is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 2/208:18 pm
IAH
- SJU
1 stop14h 39m
Multiple Airlines
Tue 2/246:00 am
SJU
- IAH
1 stop7h 11m
Multiple Airlines
Deal found 2/6![Multiple Airlines logo]()
$195
This Cheapflightsfares deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Cheapflightsfares is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 2/215:15 am
IAH
- SJU
1 stop11h 34m
Spirit Airlines
Wed 2/2511:52 am
SJU
- IAH
1 stop14h 07m
Spirit Airlines
Deal found 2/7![Spirit Airlines logo]()
$192
This Cheapflightsfares deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Cheapflightsfares is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 2/239:40 pm
IAH
- SJU
1 stop10h 37m
Spirit Airlines
Thu 2/2611:52 am
SJU
- IAH
1 stop14h 07m
Spirit Airlines
Deal found 2/7![Spirit Airlines logo]()
$187
This CheapOair deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure CheapOair is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 2/247:21 am
IAH
- SJU
1 stop6h 10m
Multiple Airlines
Mon 3/23:53 am
SJU
- IAH
1 stop17h 11m
Multiple Airlines
Deal found 2/7![Multiple Airlines logo]()
$186
This Priceline deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Priceline is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 2/248:18 pm
IAH
- SJU
1 stop26h 25m
Frontier
Mon 3/23:53 am
SJU
- IAH
1 stop17h 11m
Frontier
Deal found 2/8![Frontier logo]()
$188
This Kiwi.com deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 2/268:18 pm
IAH
- SJU
1 stop13h 09m
Multiple Airlines
Thu 3/511:52 am
SJU
- IAH
1 stop14h 07m
Multiple Airlines
Deal found 2/6![Multiple Airlines logo]()
$196
This CheapOair deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure CheapOair is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 2/288:18 pm
IAH
- SJU
1 stop15h 09m
Frontier
Mon 3/23:53 am
SJU
- IAH
1 stop17h 11m
Frontier
Deal found 2/7![Frontier logo]()
$185
This CheapOair deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure CheapOair is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 2/2812:16 pm
IAH
- SJU
1 stop8h 53m
Multiple Airlines
Mon 3/23:53 am
SJU
- IAH
1 stop17h 11m
Multiple Airlines
Deal found 2/6![Multiple Airlines logo]()
$189
This Kiwi.com deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 2/2811:12 am
IAH
- SJU
1 stop11h 31m
Multiple Airlines
Sat 3/711:52 am
SJU
- IAH
1 stop14h 07m
Multiple Airlines
Deal found 2/8![Multiple Airlines logo]()
$198
This CheapOair deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure CheapOair is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 3/35:24 pm
IAH
- SJU
1 stop23h 34m
Spirit Airlines
Fri 3/611:52 am
SJU
- IAH
1 stop14h 07m
Spirit Airlines
Deal found 2/6![Spirit Airlines logo]()
$190
This Frontier deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Frontier is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 3/37:59 pm
IAH
- SJU
1 stop11h 55m
Frontier
Sun 3/81:59 am
SJU
- IAH
1 stop10h 00m
Frontier
Deal found 2/6![Frontier logo]()
$197
This Southwest deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Southwest is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 3/31:35 pm
HOU
- SJU
2 stops9h 00m
Southwest
Fri 3/66:30 am
SJU
- HOU
1 stop10h 25m
Southwest
Deal found 2/7![Southwest logo]()
$364
One-way flights from Houston to San JuanSearch for one-way flight options from Houston to San Juan. Find affordable one-way fares based on user searches. Data last updated February 9, 2026.
Search for one-way flight options from Houston to San Juan. Find affordable one-way fares based on user searches. Data last updated February 9, 2026.
This Trip.com deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Trip.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 2/288:18 pm
IAH
- SJU
1 stop15h 09m
Frontier
Deal found 2/8![Frontier logo]()
$90
This Kiwi.com deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 3/245:24 pm
IAH
- SJU
1 stop6h 55m
Multiple Airlines
Deal found 2/7![Multiple Airlines logo]()
$91
This WAYA deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure WAYA is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 3/175:24 pm
IAH
- SJU
1 stop6h 55m
Multiple Airlines
Deal found 2/7![Multiple Airlines logo]()
$92
This Kiwi.com deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 2/247:21 am
IAH
- SJU
1 stop6h 10m
Spirit Airlines
Deal found 2/7![Spirit Airlines logo]()
$93
This Cheapflightsfares deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Cheapflightsfares is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 2/236:00 am
IAH
- SJU
1 stop6h 22m
Spirit Airlines
Deal found 2/6![Spirit Airlines logo]()
$94
This Kiwi.com deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 5/24:22 pm
IAH
- SJU
1 stop19h 11m
Multiple Airlines
Deal found 2/7![Multiple Airlines logo]()
$95
This Trip.com deal was found by Cheapflights users on 2/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Trip.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 3/19:35 am
IAH
- SJU
1 stop14h 34m
Frontier
Deal found 2/5![Frontier logo]()
$97
This Trip.com deal was found by Cheapflights users on 2/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Trip.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 3/219:26 am
IAH
- SJU
1 stop11h 08m
Frontier
Deal found 2/7![Frontier logo]()
$98
This Kiwi.com deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 5/109:41 am
IAH
- SJU
1 stop25h 52m
Frontier
Deal found 2/8![Frontier logo]()
$99
This Kiwi.com deal was found by Cheapflights users on 2/8. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 4/164:03 pm
IAH
- SJU
1 stop7h 50m
Frontier
Deal found 2/8![Frontier logo]()
$100
This Priceline deal was found by Cheapflights users on 2/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Priceline is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 4/237:00 am
IAH
- SJU
1 stop14h 40m
Frontier
Deal found 2/6![Frontier logo]()
$101
This Kiwi.com deal was found by Cheapflights users on 2/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 3/25:24 pm
IAH
- SJU
1 stop23h 34m
Spirit Airlines
Deal found 2/5![Spirit Airlines logo]()
$102
Find flight deals from Houston to San Juan
Discover tips and strategies to find the most affordable flight options for your journey from Houston (HO1) to San Juan (PR1). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated February 9, 2026.
Round-trip from | $185 (CheapOair) |
|---|---|
One-way from | $90 (Trip.com) |
Popular in | December |
Cheapest in | April |
Average price | $316 |
Cheapflights Fare Finder
Customize your flight search to find flights from Houston to San Juan that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated February 9, 2026.
Use the filters below to find and compare flights from Houston to San Juan that are best for you.
Fly from
Houston
Fly to
San Juan
Route
Depart
Return
Price
HoustonSan Juan
IAH - SJU
IAHSJU
Houston George Bush Intcntl
Fri 5/1
9:27 am-10:02 am
1 stop23h 35m
San Juan Luis Munoz Marin Intl
Mon 5/4
9:49 pm-5:08 pm
2 stops20h 19m
$300
HoustonSan Juan
IAH - SJU
IAHSJU
Houston George Bush Intcntl
Mon 4/27
3:03 pm-8:38 pm
Nonstop4h 35m
San Juan Luis Munoz Marin Intl
Fri 5/1
4:55 pm-12:45 am
1 stop8h 50m
$360
HoustonSan Juan
HOU - SJU
HOUSJU
Houston Hobby
Sat 5/9
5:15 am-2:40 pm
1 stop8h 25m
San Juan Luis Munoz Marin Intl
Mon 5/11
8:40 pm-8:05 am
1 stop12h 25m
$364
HoustonSan Juan
HOU - SJU
HOUSJU
Houston Hobby
Wed 5/6
1:31 pm-11:13 pm
1 stop8h 42m
San Juan Luis Munoz Marin Intl
Wed 5/13
12:50 pm-11:08 pm
1 stop11h 18m
$364
HoustonSan Juan
HOU - SJU
HOUSJU
Houston Hobby
Sat 5/2
2:00 pm-11:40 pm
1 stop8h 40m
San Juan Luis Munoz Marin Intl
Tue 5/5
5:35 am-3:00 pm
2 stops10h 25m
$364
HoustonSan Juan
HOU - SJU
HOUSJU
Houston Hobby
Wed 5/6
10:25 am-9:05 pm
2 stops9h 40m
San Juan Luis Munoz Marin Intl
Wed 5/13
5:35 am-2:00 pm
2 stops9h 25m
$364
HoustonSan Juan
IAH - SJU
IAHSJU
Houston George Bush Intcntl
Sun 5/10
3:03 pm-8:38 pm
Nonstop4h 35m
San Juan Luis Munoz Marin Intl
Sat 5/30
2:05 am-6:01 am
Nonstop4h 56m
$381
HoustonSan Juan
HOU - SJU
HOUSJU
Houston Hobby
Wed 5/6
11:00 am-10:40 pm
1 stop10h 40m
San Juan Luis Munoz Marin Intl
Sun 5/10
6:25 am-4:00 pm
2 stops10h 35m
$390
HoustonSan Juan
HOU - SJU
HOUSJU
Houston Hobby
Tue 3/3
4:15 pm-12:35 am
1 stop6h 20m
San Juan Luis Munoz Marin Intl
Fri 3/6
11:15 am-4:55 pm
1 stop7h 40m
$390
HoustonSan Juan
HOU - SJU
HOUSJU
Houston Hobby
Wed 4/8
1:00 pm-11:40 pm
2 stops9h 40m
San Juan Luis Munoz Marin Intl
Wed 4/15
5:35 am-2:00 pm
2 stops9h 25m
$390
Showing 1-10 of 43 results
Best time to book a flight from Houston to San Juan
Have a flexible travel schedule? Discover the best time to fly to San Juan from Houston with our price prediction graph.
HO1-PR1
IAH-SJU
HOU-SJU
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.
Cheapflights Insights
Everything you need to know about your flight from Houston to San Juan
HO1-PR1
IAH-SJU
HOU-SJU
How far ahead should I book a flight from Houston to San Juan?
Use this chart to determine the optimal time to book a round-trip flight from Houston to San Juan. Price data was last updated on January 30, 2026.
To ensure you get the cheapest price possible for a flight from Houston to San Juan, you should look to book at least 9 days in advance of your intended travel date. The price of your flight may increase if you delay and leave booking until a week or so before departure.
What is the cheapest month to book a flight from Houston to San Juan?
Currently, October is the cheapest month in which you can book a flight from Houston to San Juan (average of $108). Flying from Houston to San Juan in December is currently the most expensive (average of $151). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.
What is the cheapest time of day to fly from HOU to SJU?
Find hourly flight availability from Houston to San Juan. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated February 9, 2026.
A simple way to save on the total cost of your ticket is to fly from Houston to San Juan at noon. If you’re flexible enough to do this you can expect to save up to 28% on your trip compared to booking a flight in the morning.
What is the cheapest day to fly from Houston to San Juan?
Use this chart to determine the cheapest time to fly round-trip from Houston to San Juan. Price data was last updated on February 7, 2026.
Travelers seeking maximum savings on their Houston to San Juan flight should consider departing on Tuesday at noon when fares are most often at their lowest. Tuesday evenings flights should be avoided if possible as fares are typically the most expensive at this time.
How often are flights from Houston to San Juan delayed?
About 20% of weekly flights between Houston and San Juan have experienced delays in the past year, with the average delay time being 102 minutes.
What is the most punctual flight time for Houston to San Juan flights?
Historically, flights departing in the morning are less likely to be delayed, whereas flights leaving in the early afternoon tend to experience delays more often.
What day of the week experiences the fewest flight delays on this route?
Friday tends to have the lowest number of delays on this route, whereas Sunday has historically faced a higher average of delays compared to other days of the week.
Which airline has the best punctuality record on Houston to San Juan flights?
Over the last year, Southwest have had the lowest number of delays on this route, with just 20% of flights being delayed.
Reviews of airlines servicing San Juan
Get insights into the airlines that provide service to San Juan. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to San Juan. Reviews last updated February 9, 2026.
See what other customers who have flown with Southwest, United Airlines, and American Airlines from Houston to San Juan have to say. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
Comfort
8.0
Entertainment
7.5
Food
7.0
Crew
8.6
Boarding
8.1
Overall
8.0
Reviews
1 / 20
2.0
MediocreThomas,Dec 2025
SEA - DEN
Comfort
8.0
Entertainment
7.5
Food
7.0
Crew
8.6
Boarding
8.1
Overall
8.0
Reviews
1 / 20
2.0
MediocreThomas,Dec 2025
SEA - DEN
Comfort
8.0
Entertainment
7.5
Food
7.0
Crew
8.6
Boarding
8.1
Overall
8.0
Reviews
1 / 20
2.0
MediocreThomas,Dec 2025
SEA - DEN
Comfort
8.0
Entertainment
7.5
Food
7.0
Crew
8.6
Boarding
8.1
Overall
8.0
Reviews
1 / 20
2.0
MediocreThomas,Dec 2025
SEA - DEN
Comfort
8.0
Entertainment
7.5
Food
7.0
Crew
8.6
Boarding
8.1
Overall
8.0
Reviews
1 / 20
2.0
MediocreThomas,Dec 2025
SEA - DEN
Comfort
8.0
Entertainment
7.5
Food
7.0
Crew
8.6
Boarding
8.1
Overall
8.0
Reviews
1 / 20
2.0
MediocreThomas,Dec 2025
SEA - DEN
Related info for your journey
Find useful and relevant information for your journey from Houston to San Juan. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.
Browse thousands of different options on Cheapflights for your next trip
Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.
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Alternative routes for Houston to San Juan
See prices for flight routes from nearby airports that may be better suited for you.
Complete your trip
Complete your trip to San Juan by adding a car rental and/or hotel reservation to your travel itinerary.
Search flights from Houston to San Juan by cabin class
Find flights from Houston to San Juan, based on your preferred cabin class, be it economy, premium economy, business, or first class.
Houston and San Juan flights
Browse other Houston and San Juan flight options. Last updated on February 9, 2026.
Popular flight searches
Check out other popular destinations found by fellow travelers in 2026
Top 6 airlines flying from Houston to San Juan
Discover the top 6 airlines that operate flights from Houston to San Juan. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated February 9, 2026.
| Airline | Cheapest | Average | Flexibility | On-time |
|---|---|---|---|---|
| Cheapest$100 | Average$303 | FlexibilityNo cancel fee | On-time62% | |
| Cheapest$102 | Average$260 | FlexibilityNo cancel fee | On-time65% | |
| Cheapest$108 | Average$400 | FlexibilityNo cancel fee | On-timeN/A | |
| Cheapest$165 | Average$526 | FlexibilityNo cancel fee | On-time63% | |
| Cheapest$170 | Average$389 | FlexibilityNo cancel fee | On-time71% | |
| Cheapest$180 | Average$484 | FlexibilityNo cancel fee | On-time69% |