Houston

$116+ Cheap flights from San Juan to Houston

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 8/12. Fares are subject to change and may not be available on all flights or dates of travel.
SJU — HOU
Jun 17 — Jun 241
We work with more than 300 partners to bring you better travel deals

Find cheap flights from San Juan to Houston with Cheapflights

1. Tell us where you want to go

Enter your travel information like dates, passengers, trip type (one-way or round trip), and preferred cabin class then click “Find deals”

2. Select your favorite providers

We find the providers serving your travel needs. Choose up to four travel providers to compare side-by-side for flights, hotels, or car rentals.

3. Compare prices and book

Review each provider’s pricing and select the best option for you! Book through your favorite provider’s website for a seamless experience.
Cheapflights Tip: The best prices from San Juan to Houston are usually found in October or September, booked 56 days in advance, depart on a Friday or Thursday and return on a Thursday

Cheap flight deals from San Juan to Houston

Cheapest flights from San Juan to Houston
Explore the most affordable flight options available from San Juan to Houston. Find the lowest fares from popular airlines and budget airlines, with prices last updated on May 18, 2026.

This Kiwi.com deal was found by Cheapflights users on 5/14. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 8/229:24 am
SJU
-
IAH
1 stop9h 45m
Frontier
Sat 8/298:29 am
IAH
-
SJU
1 stop6h 29m
Frontier
Deal found 5/14$310
This Kiwi.com deal was found by Cheapflights users on 5/18. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 7/287:00 am
SJU
-
IAH
2 stops25h 20m
Frontier
Sat 8/88:37 pm
IAH
-
SJU
1 stop26h 51m
Frontier
Deal found 5/18$312
This Kiwi.com deal was found by Cheapflights users on 5/15. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/79:05 pm
SJU
-
IAH
1 stop12h 40m
Frontier
Mon 10/125:09 pm
IAH
-
SJU
1 stop19h 07m
Frontier
Deal found 5/15$313
This Kiwi.com deal was found by Cheapflights users on 5/14. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 9/103:00 am
SJU
-
IAH
1 stop8h 40m
Frontier
Mon 9/147:00 am
IAH
-
SJU
1 stop7h 25m
Frontier
Deal found 5/14$321
This Kiwi.com deal was found by Cheapflights users on 5/17. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 6/56:00 am
SJU
-
IAH
1 stop10h 13m
Frontier
Mon 6/158:20 am
IAH
-
SJU
2 stops42h 37m
Frontier
Deal found 5/17$322
This Kiwi.com deal was found by Cheapflights users on 5/15. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 8/107:30 am
SJU
-
IAH
1 stop25h 24m
Frontier
Tue 8/188:29 am
IAH
-
SJU
1 stop30h 29m
Frontier
Deal found 5/15$328
This Kiwi.com deal was found by Cheapflights users on 5/16. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 8/167:30 am
SJU
-
IAH
1 stop25h 24m
Frontier
Sun 8/238:29 am
IAH
-
SJU
1 stop30h 29m
Frontier
Deal found 5/16$333
This Orbitz deal was found by Cheapflights users on 5/15. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Orbitz is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 7/77:30 am
SJU
-
IAH
1 stop25h 24m
Frontier
Tue 7/148:20 am
IAH
-
SJU
1 stop6h 45m
Frontier
Deal found 5/15$336
This Kiwi.com deal was found by Cheapflights users on 5/18. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 8/16:00 am
SJU
-
IAH
1 stop9h 50m
Frontier
Tue 8/48:20 am
IAH
-
SJU
2 stops32h 14m
Frontier
Deal found 5/18$346
This Kiwi.com deal was found by Cheapflights users on 5/18. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 8/16:00 am
SJU
-
IAH
1 stop9h 50m
Frontier
Sat 8/88:37 pm
IAH
-
SJU
1 stop26h 51m
Frontier
Deal found 5/18$348
This Kiwi.com deal was found by Cheapflights users on 5/18. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 7/287:00 am
SJU
-
IAH
2 stops25h 20m
Frontier
Wed 8/51:14 pm
IAH
-
SJU
1 stop17h 43m
Frontier
Deal found 5/18$350
This Southwest deal was found by Cheapflights users on 5/15. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Southwest is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 7/78:35 pm
SJU
-
HOU
2 stops14h 10m
Southwest
Tue 7/147:20 pm
HOU
-
SJU
Nonstop4h 25m
Southwest
Deal found 5/15$462

Find flight deals from San Juan to Houston

Discover tips and strategies to find the most affordable flight options for your journey from San Juan (PR1) to Houston (HO1). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated May 18, 2026.

Round-trip from

$277
(Kiwi.com)

One-way from

$116
(Kiwi.com)

Popular in

February

Cheapest in

October

Average price

$416
From San Juan to Houston
One-way flight from San Juan to Houston
Highest demand for flights based on searches. 8% potential increase in price ($33 potential increase over avg. RT price).
Cheapest flight prices on average. 3% potential price decrease ($11 potential savings vs. average RT price).
Average for round-trip flights in May 2026

Cheapflights Fare Finder

 
Customize your flight search to find flights from San Juan to Houston that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated May 18, 2026.
Use the filters below to find and compare flights from San Juan to Houston that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Thu 6/18

10:20 pm-8:25 am

1 stop11h 05m

Houston Hobby

Mon 6/22

8:40 pm-9:00 am

1 stop11h 20m

$466

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Mon 6/15

10:20 pm-8:00 am

1 stop10h 40m

Houston Hobby

Mon 6/22

8:40 pm-9:00 am

1 stop11h 20m

$506

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Fri 8/7

6:30 am-3:05 pm

2 stops9h 35m

Houston Hobby

Mon 8/10

2:40 pm-11:50 pm

2 stops8h 10m

$506

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Sat 7/18

6:30 am-1:50 pm

2 stops8h 20m

Houston Hobby

Sat 7/25

3:40 pm-1:15 am

1 stop8h 35m

$506

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Thu 7/23

6:00 am-11:10 am

1 stop6h 10m

Houston Hobby

Mon 7/27

6:05 pm-1:20 am

1 stop6h 15m

$506

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Wed 6/10

7:20 pm-9:45 am

2 stops15h 25m

Houston Hobby

Mon 6/15

8:40 pm-9:00 am

1 stop11h 20m

$506

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Fri 6/12

5:00 am-11:10 am

1 stop7h 10m

Houston Hobby

Mon 6/15

6:05 pm-1:20 am

1 stop6h 15m

$516

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Fri 6/26

8:15 pm-7:45 am

1 stop12h 30m

Houston Hobby

Wed 7/8

2:00 pm-11:45 pm

2 stops8h 45m

$521

San JuanHouston

SJU - IAH

SJUIAH

San Juan Luis Munoz Marin Intl

Mon 6/1

4:55 pm-12:45 am

1 stop8h 50m

Houston George Bush Intcntl

Sat 6/6

11:56 pm-5:29 am

Nonstop4h 33m

$526

San JuanHouston

SJU - HOU

SJUHOU

San Juan Luis Munoz Marin Intl

Sat 6/27

5:00 pm-12:05 am

1 stop8h 05m

Houston Hobby

Sat 7/4

10:20 am-9:00 pm

2 stops9h 40m

$546

Flights are sorted by cheapest round-trip flights first.

Deals found on 5/18

Showing 1-10 of 43 resultsSorted by cheapest first
1
2
3
...
5

Best time to book a flight from San Juan to Houston

Have a flexible travel schedule? Discover the best time to fly to Houston from San Juan with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from San Juan to Houston

How far ahead should I book a flight from San Juan to Houston?

To ensure you get the cheapest price possible for a flight from San Juan to Houston, you should look to book at least 32 days in advance of your intended travel date. The price of your flight may increase if you delay and leave booking until a week or so before departure.

What is the cheapest month to book a flight from San Juan to Houston?

Currently, July is the cheapest month in which you can book a flight from San Juan to Houston (average of $60). Flying from San Juan to Houston in September is currently the most expensive (average of $138). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from SJU to HOU?

Find hourly flight availability from San Juan to Houston. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated May 18, 2026.

It’s optimal to fly from San Juan to Houston in the evening. By choosing this option you can save up to 16% on the cost of your flight, compared to a flight at noon.

What is the cheapest day to fly from San Juan to Houston?

Use this chart to determine the cheapest time to fly round-trip from San Juan to Houston. Price data was last updated on May 16, 2026.

Travelers seeking maximum savings on their San Juan to Houston flight should consider departing on Thursday afternoons when fares are most often at their lowest. Sunday at noon flights should be avoided if possible as fares are typically the most expensive at this time.

How much does it cost to fly round-trip from San Juan to Houston?

How often are flights from San Juan to Houston delayed?

About 9% of weekly flights between San Juan and Houston have experienced delays in the past year, with the average delay time being 162 minutes.

What is the most punctual flight time for San Juan to Houston flights?

Historically, flights departing at night are less likely to be delayed, whereas flights leaving in the evening tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Friday tends to have the lowest number of delays on this route, whereas Sunday has historically faced a higher average of delays compared to other days of the week.

Which airline has the best punctuality record on San Juan to Houston flights?

Over the last year, United Airlines have had the lowest number of delays on this route, with just 8% of flights being delayed.

Reviews of airlines servicing Houston

Get insights into the airlines that provide service to Houston. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Houston. Reviews last updated May 18, 2026.
Peruse reviews from past customers who have flown with Southwest,United Airlines, andAmerican Airlines from San Juan to Houston to help guide your decision. You can also see how each airline stacks up in terms of entertainment options, comfort, food, crew/service, and boarding process.

Comfort

8.0

Crew

8.6

Food

7.0

Entertainment

7.5

Overall

7.9

Boarding

8.1

Reviews

1 / 20
2.0
Mediocre

Dominic,Mar 2026

MCO - SMF

I had to try and sleep on the floor of the Austin airport. I spent 12 hours there. The airline policies were so poor, that a near violent argument broke out between the people in front of me and the flight attendants - making for a super stressful situation at 30,000 feet. Garbage airline choice by Kayak Garbage idea to book a flight with a layover. Next time I will pay for a quality booking myself, and somehow force the company to reimburse it.

Comfort

8.0

Crew

8.6

Food

7.0

Entertainment

7.5

Overall

7.9

Boarding

8.1

Reviews

1 / 20
2.0
Mediocre

Dominic,Mar 2026

MCO - SMF

I had to try and sleep on the floor of the Austin airport. I spent 12 hours there. The airline policies were so poor, that a near violent argument broke out between the people in front of me and the flight attendants - making for a super stressful situation at 30,000 feet. Garbage airline choice by Kayak Garbage idea to book a flight with a layover. Next time I will pay for a quality booking myself, and somehow force the company to reimburse it.

Comfort

8.0

Crew

8.6

Food

7.0

Entertainment

7.5

Overall

7.9

Boarding

8.1

Reviews

1 / 20
2.0
Mediocre

Dominic,Mar 2026

MCO - SMF

I had to try and sleep on the floor of the Austin airport. I spent 12 hours there. The airline policies were so poor, that a near violent argument broke out between the people in front of me and the flight attendants - making for a super stressful situation at 30,000 feet. Garbage airline choice by Kayak Garbage idea to book a flight with a layover. Next time I will pay for a quality booking myself, and somehow force the company to reimburse it.

Comfort

8.0

Crew

8.6

Food

7.0

Entertainment

7.5

Overall

7.9

Boarding

8.1

Reviews

1 / 20
2.0
Mediocre

Dominic,Mar 2026

MCO - SMF

I had to try and sleep on the floor of the Austin airport. I spent 12 hours there. The airline policies were so poor, that a near violent argument broke out between the people in front of me and the flight attendants - making for a super stressful situation at 30,000 feet. Garbage airline choice by Kayak Garbage idea to book a flight with a layover. Next time I will pay for a quality booking myself, and somehow force the company to reimburse it.

Comfort

8.0

Crew

8.6

Food

7.0

Entertainment

7.5

Overall

7.9

Boarding

8.1

Reviews

1 / 20
2.0
Mediocre

Dominic,Mar 2026

MCO - SMF

I had to try and sleep on the floor of the Austin airport. I spent 12 hours there. The airline policies were so poor, that a near violent argument broke out between the people in front of me and the flight attendants - making for a super stressful situation at 30,000 feet. Garbage airline choice by Kayak Garbage idea to book a flight with a layover. Next time I will pay for a quality booking myself, and somehow force the company to reimburse it.

Comfort

8.0

Crew

8.6

Food

7.0

Entertainment

7.5

Overall

7.9

Boarding

8.1

Reviews

1 / 20
2.0
Mediocre

Dominic,Mar 2026

MCO - SMF

I had to try and sleep on the floor of the Austin airport. I spent 12 hours there. The airline policies were so poor, that a near violent argument broke out between the people in front of me and the flight attendants - making for a super stressful situation at 30,000 feet. Garbage airline choice by Kayak Garbage idea to book a flight with a layover. Next time I will pay for a quality booking myself, and somehow force the company to reimburse it.

Related info for your journey

Find useful and relevant information for your journey from San Juan to Houston. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.
  • How long is the flight from San Juan to Houston?

    Departing from San Juan to Houston will take you 8h 50m. The distance from San Juan to Houston is about 2004 mi. When browsing for deals, the options you’ll see will be for both nonstop flights and flights with stops.

  • What are the cheapest airlines flying from San Juan to Houston round-trip?

    Cheapflights users have booked flights from San Juan to Houston round-trip from $87. Other airlines that can offer you cheap pricing are Frontier, from $123, and American Airlines, from $175. Spirit Airlines is currently priced 76% below the average price you’ll pay for this route.

  • What are the cheapest airlines to fly from San Juan to Houston one-way?

    The cheapest airlines for a one-way flight from San Juan to Houston are Spirit Airlines ($66), American Airlines ($88), and Frontier ($90).

  • What are the cheapest flights from San Juan to Houston?

    Looking at all options, your cheapest flight can be booked for $181. While the most popular route (San Juan Luis Munoz Marin Intl - Houston Hobby) can be booked for $395 on average, our data indicates $610 when flying from San Juan to Houston.

  • Can I find deals for flights from San Juan to Houston that include hotel bookings?

    Yes. In addition to deals on San Juan to Houston flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from San Juan to Houston?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from San Juan to Houston.

  • Can I find deals for business class flights from San Juan to Houston?

    Yes. Cheapflights offers flight deals from San Juan to Houston by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from San Juan to Houston?

    Currently, July is the cheapest month in which you can book a flight from San Juan to Houston (average of $60). Flying from San Juan to Houston in September is currently the most expensive (average of $138). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Alternative routes for San Juan to Houston

See prices for flight routes from nearby airports that may be better suited for you.

Top 5 airlines flying from San Juan to Houston

Discover the top 5 airlines that operate flights from San Juan to Houston. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated May 18, 2026.
AirlineCheapestAverageFlexibilityOn-time
Spirit AirlinesCheapest$87Average$267FlexibilityNo cancel feeOn-time65%
FrontierCheapest$123Average$288FlexibilityNo cancel feeOn-time62%
American AirlinesCheapest$175Average$388FlexibilityNo cancel feeOn-time71%
United AirlinesCheapest$223Average$497FlexibilityNo cancel feeOn-time69%
SouthwestCheapest$270Average$485FlexibilityNo cancel feeOn-time63%

100% Free

Cheapflights is completely free to use, so you can start saving the moment you arrive.

Book with Flexibility

Our users can plan ahead with confidence and find flights with no change fees

Travel Smart

Millions of people come to us for their flight needs every year. We help make travel planning easy by providing useful insights and data-driven graphs that can inform your decisions.