HomeSearch by dateVacation packagesHotelsFlight dealsCar rentalTravel tips & news
Kota Kinabalu

$41+ Cheap flights from Manila (MNL) to Kota Kinabalu (BKI)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 10/2. Fares are subject to change and may not be available on all flights or dates of travel.
MNL — BKI
Jul 5 — Jul 121
Sat 7/5
Sat 7/12
1 adult, Economy
We work with more than 300 partners to bring you better travel deals

Find cheap flights from Manila to Kota Kinabalu with Cheapflights

1. Tell us where you want to go

Enter your travel information like dates, passengers, trip type (one-way or round trip), and preferred cabin class then click “Find deals”

2. Select your favorite providers

We find the providers serving your travel needs. Choose up to four travel providers to compare side-by-side for flights, hotels, or car rentals.

3. Compare prices and book

Review each provider’s pricing and select the best option for you! Book through your favorite provider’s website for a seamless experience.

Cheapflights Tip: The best prices from Manila Ninoy Aquino Intl to Kota Kinabalu are usually found in July or June, booked 71 days in advance, depart on a Friday or Thursday and return on a Monday

Cheap flight deals from Manila to Kota Kinabalu

Discover tips and strategies to find the most affordable flight options for your journey from Manila (MNL) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated June 30, 2025.

Round-trip from

$95
(AirAsia)

One-way from

$41
(AirAsia)

Popular in

January

Cheapest in

July

Average price

$97

Good round-trip deal

$79 or less

Good one-way deal

$36 or less
From Manila Ninoy Aquino Intl to Kota Kinabalu
Search Deals
One-way flight from Manila Ninoy Aquino Intl to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 15% potential increase in price ($21 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 1% potential price decrease ($2 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in June 2025
Search Deals
Price to beat on a round-trip flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
Search Deals
Price to beat on a one-way flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
Search Deals

Find flight deals from Manila to Kota Kinabalu

Cheapest flights from Manila to Kota Kinabalu
Explore the most affordable flight options available from Manila to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on June 30, 2025.

This AirAsia deal was found by Cheapflights users on 6/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure AirAsia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/811:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sun 10/121:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 6/30$95
This Mytrip deal was found by Cheapflights users on 6/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 8/146:55 amMNL - BKI
2 stops15h 20mMultiple Airlines
Wed 8/201:45 amBKI - MNL
Nonstop2h 10mMultiple Airlines
Deal found 6/29$143
This CheapOair deal was found by Cheapflights users on 6/28. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure CheapOair is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/86:55 amMNL - BKI
1 stop12h 30mScoot
Mon 10/138:25 pmBKI - MNL
1 stop22h 10mScoot
Deal found 6/28$159
This Trip.com deal was found by Cheapflights users on 6/28. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Trip.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 11/171:10 amMNL - BKI
1 stop21h 05mAirAsia
Tue 11/2511:00 amBKI - MNL
1 stop13h 35mAirAsia
Deal found 6/28$214
This Mytrip deal was found by Cheapflights users on 6/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 7/115:45 pmMNL - BKI
1 stop8h 45mChina Southern
Sun 7/133:30 amBKI - MNL
1 stop7h 05mChina Southern
Deal found 6/30$312
This oojo deal was found by Cheapflights users on 6/30. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure oojo is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 7/119:15 pmMNL - BKI
1 stop25h 40mPhilippine Airlines
Mon 7/146:50 amBKI - MNL
1 stop9h 30mPhilippine Airlines
Deal found 6/30$325
This Booking.com deal was found by Cheapflights users on 6/28. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 9/283:05 pmMNL - BKI
1 stop9h 35mMalaysia Airlines
Tue 9/3012:50 pmBKI - MNL
2 stops23h 10mMalaysia Airlines
Deal found 6/28$480

Cheapflights Fare Finder

Customize your flight search to find flights from Manila to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated June 30, 2025.
Use the filters below to find and compare flights from Manila to Kota Kinabalu that are best for you.

Fly from

Manila

Fly to

Kota Kinabalu

Route

Depart

Return

Price

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 10/8

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Sun 10/12

1:45 am-3:55 am

Nonstop2h 10m

$95

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Thu 8/14

6:55 am-10:15 pm

2 stops15h 20m

Kota Kinabalu

Wed 8/20

1:45 am-3:55 am

Nonstop2h 10m

$143

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 10/8

6:55 am-7:25 pm

1 stop12h 30m

Kota Kinabalu

Mon 10/13

8:25 pm-6:35 pm

1 stop22h 10m

$159

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 11/17

1:10 am-10:15 pm

1 stop21h 05m

Kota Kinabalu

Tue 11/25

11:00 am-12:35 am

1 stop13h 35m

$214

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 7/11

5:45 pm-2:30 am

1 stop8h 45m

Kota Kinabalu

Sun 7/13

3:30 am-10:35 am

1 stop7h 05m

$312

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 7/11

9:15 pm-10:55 pm

1 stop25h 40m

Kota Kinabalu

Mon 7/14

6:50 am-4:20 pm

1 stop9h 30m

$325

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 9/28

3:05 pm-12:40 am

1 stop9h 35m

Kota Kinabalu

Tue 9/30

12:50 pm-12:00 pm

2 stops23h 10m

$480

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Thu 10/2

11:10 pm-1:20 am

Nonstop2h 10m

$41

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 10/13

7:35 pm-11:15 am

1 stop15h 40m

$77

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 10/13

6:55 am-10:15 pm

2 stops15h 20m

$88

Flights are sorted by cheapest round-trip flights first.

Deals found on 6/29

Showing 1-10 of 13 results
1
2

Best time to book a flight from Manila to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Manila with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Manila to Kota Kinabalu

How far ahead should I book a flight from Manila to Kota Kinabalu?

Use this chart to determine the optimal time to book a round-trip flight from Manila to Kota Kinabalu. Price data was last updated on June 27, 2025.

The best time to book flights from Manila to Kota Kinabalu is 71 days before your desired departure date. The cost of your flight will likely increase significantly if you book two weeks in advance of your flight.

What is the cheapest time of day to fly from MNL to BKI?

Find hourly flight availability from Manila to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated June 30, 2025.

It’s optimal to fly from Manila to Kota Kinabalu at noon. By choosing this option you can save up to 19% on the cost of your flight, compared to a flight in the morning.

Reviews of airlines servicing Kota Kinabalu

Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated June 30, 2025.
See what other customers who have flown with China Southern, Malaysia Airlines, and Philippine Airlines from Manila to Kota Kinabalu have to say. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
China Southern
7.6
Good
100 reviews

Crew

8.3

Boarding

8.0

Comfort

7.9

Overall

7.6

Entertainment

7.6

Food

7.4

Reviews

1 / 3
10.0
Excellent

Puey cheng,Apr 2025

SIN - CAN

Seats are clean and comfortable. Most important, the leg room is wider than many other airlines
China Southern
7.6
Good
100 reviews
China Southern
7.6
Good
100 reviews

Crew

8.3

Boarding

8.0

Comfort

7.9

Overall

7.6

Entertainment

7.6

Food

7.4

Reviews

1 / 3
10.0
Excellent

Puey cheng,Apr 2025

SIN - CAN

Seats are clean and comfortable. Most important, the leg room is wider than many other airlines
Malaysia Airlines
7.4
Good
264 reviews
China Southern
7.6
Good
100 reviews

Crew

8.3

Boarding

8.0

Comfort

7.9

Overall

7.6

Entertainment

7.6

Food

7.4

Reviews

1 / 3
10.0
Excellent

Puey cheng,Apr 2025

SIN - CAN

Seats are clean and comfortable. Most important, the leg room is wider than many other airlines
Philippine Airlines
7.2
Good
881 reviews
China Southern
7.6
Good
100 reviews

Crew

8.3

Boarding

8.0

Comfort

7.9

Overall

7.6

Entertainment

7.6

Food

7.4

Reviews

1 / 3
10.0
Excellent

Puey cheng,Apr 2025

SIN - CAN

Seats are clean and comfortable. Most important, the leg room is wider than many other airlines
China Eastern
7.1
Good
152 reviews
China Southern
7.6
Good
100 reviews

Crew

8.3

Boarding

8.0

Comfort

7.9

Overall

7.6

Entertainment

7.6

Food

7.4

Reviews

1 / 3
10.0
Excellent

Puey cheng,Apr 2025

SIN - CAN

Seats are clean and comfortable. Most important, the leg room is wider than many other airlines
Scoot
6.7
Okay
306 reviews
China Southern
7.6
Good
100 reviews

Crew

8.3

Boarding

8.0

Comfort

7.9

Overall

7.6

Entertainment

7.6

Food

7.4

Reviews

1 / 3
10.0
Excellent

Puey cheng,Apr 2025

SIN - CAN

Seats are clean and comfortable. Most important, the leg room is wider than many other airlines

Related info for your journey

Find useful and relevant information for your journey from Manila to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How popular is this Manila to Kota Kinabalu flight route?

    This flight path from Manila Ninoy Aquino Intl to Kota Kinabalu was viewed by 18 users in the past month. Keep an eye out for changes in search interest prior to high and low season.

  • What are the cheapest airlines flying from Manila to Kota Kinabalu round-trip?

    Our cheapest airline available from Manila to Kota Kinabalu is Philippines AirAsia. Our recent data shows that you can find tickets from as low as $95 on this airline. Additional options worth looking into are Scoot and AirAsia, starting at $159 and $214 round-trip. Philippines AirAsia is currently priced 16% below the average price you’ll pay for this route.

  • What are the cheapest airlines to fly from Manila to Kota Kinabalu one-way?

    To fly one-way, consider booking your trip with Philippines AirAsia, which is currently one of the cheapest options available, starting at $41. Scoot flights start at $77 while deals on AirAsia start at $148 one-way.

  • What are the cheapest flights from Manila to Kota Kinabalu?

    On average you can expect to pay $70 for a flight from Manila to Kota Kinabalu. The cheapest flight overall is $32 while the most popular route, (Manila Ninoy Aquino Intl - Kota Kinabalu) is currently priced at $409.

  • Can I find deals for flights from Manila to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Manila to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Manila to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Manila to Kota Kinabalu.

  • Can I find deals for business class flights from Manila to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Manila to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Complete your trip

Complete your trip to Kota Kinabalu by adding a car rental and/or hotel reservation to your travel itinerary.
Kota Kinabalu car rentals
Kota Kinabalu Airport car rentals

Top airline flying from Manila to Kota Kinabalu

Discover the top airline that operate flights from Manila to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated June 30, 2025.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest$81Average$108FlexibilityNo cancel feeOn-time53%

100% Free

Cheapflights is completely free to use, so you can start saving the moment you arrive.

Book with Flexibility

Our users can plan ahead with confidence and find flights with no change fees

Travel Smart

Millions of people come to us for their flight needs every year. We help make travel planning easy by providing useful insights and data-driven graphs that can inform your decisions.