$72+ Cheap flights from Manila (MNL) to Kota Kinabalu (BKI)
This is the cheapest round-trip flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 9/16. Fares are subject to change and may not be available on all flights or dates of travel.
MNL — BKI
Oct 6 — Oct 131
Round-trip
1 adult, Economy
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Find cheap flights from Manila to Kota Kinabalu with Cheapflights
1. Tell us where you want to go
Enter your travel information like dates, passengers, trip type (one-way or round trip), and preferred cabin class then click “Find deals”2. Select your favorite providers
We find the providers serving your travel needs. Choose up to four travel providers to compare side-by-side for flights, hotels, or car rentals.3. Compare prices and book
Review each provider’s pricing and select the best option for you! Book through your favorite provider’s website for a seamless experience.Cheapflights Tip: The best prices from Manila Ninoy Aquino Intl to Kota Kinabalu are usually found in February or November, booked 47 days in advance, depart on a Tuesday or Thursday and return on a Wednesday
Cheap flight deals from Manila to Kota Kinabalu
Cheapest
Best
Last-minute
One-way
Cheapest flights from Manila to Kota KinabaluExplore the most affordable flight options available from Manila to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on September 6, 2026.
Explore the most affordable flight options available from Manila to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on September 6, 2026.
This Mytrip deal was found by Cheapflights users on 9/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 10/511:10 pm -
Nonstop2h 10m
Sun 10/181:45 am -
Nonstop2h 10m
Deal found 9/1![Philippines AirAsia logo]()
$141
This Mytrip deal was found by Cheapflights users on 9/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 10/211:10 pm -
Nonstop2h 10m
Mon 10/51:45 am -
Nonstop2h 10m
Deal found 9/2![Philippines AirAsia logo]()
$150
This AirAsia deal was found by Cheapflights users on 9/3. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure AirAsia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 10/304:15 pm -
Nonstop2h 05m
Mon 11/27:05 pm -
Nonstop2h 10m
Deal found 9/3![Philippines AirAsia logo]()
$155
This AirAsia deal was found by Cheapflights users on 9/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure AirAsia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 9/1311:10 pm -
Nonstop2h 10m
Fri 9/181:45 am -
Nonstop2h 10m
Deal found 9/4![Philippines AirAsia logo]()
$159
This AirAsia deal was found by Cheapflights users on 9/3. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure AirAsia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 9/2311:10 pm -
Nonstop2h 10m
Mon 9/281:45 am -
Nonstop2h 10m
Deal found 9/3![Philippines AirAsia logo]()
$176
This Booking.com deal was found by Cheapflights users on 9/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 9/411:10 pm -
Nonstop2h 10m
Mon 9/71:45 am -
Nonstop2h 10m
Deal found 9/4![Philippines AirAsia logo]()
$179
This Booking.com deal was found by Cheapflights users on 9/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 9/411:10 pm -
Nonstop2h 10m
Sun 9/61:45 am -
Nonstop2h 10m
Deal found 9/4![Philippines AirAsia logo]()
$184
This Booking.com deal was found by Cheapflights users on 9/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 10/57:40 pm -
1 stop15h 35m
Mon 10/198:30 pm -
1 stop22h 10m
Deal found 9/1![Scoot logo]()
$195
This Mytrip deal was found by Cheapflights users on 9/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 10/57:40 pm -
1 stop15h 35m
Sun 10/181:45 am -
Nonstop2h 10m
Deal found 9/1![Multiple Airlines logo]()
$203
This Booking.com deal was found by Cheapflights users on 9/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 10/137:40 pm -
1 stop13h 10m
Mon 10/199:50 am -
1 stop8h 50m
Deal found 9/4![Scoot logo]()
$221
This Kiwi.com deal was found by Cheapflights users on 9/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 10/211:10 pm -
Nonstop2h 10m
Tue 10/64:30 pm -
2 stops13h 20m
Deal found 9/2![Multiple Airlines logo]()
$222
This Trip.com deal was found by Cheapflights users on 9/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Trip.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 11/94:15 pm -
Nonstop2h 05m
Thu 11/125:20 am -
1 stop22h 20m
Deal found 9/5![Multiple Airlines logo]()
$226
Best flights from Manila to Kota KinabaluDiscover carefully curated flight deals from Manila to Kota Kinabalu that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated September 6, 2026.
Discover carefully curated flight deals from Manila to Kota Kinabalu that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated September 6, 2026.
This AirAsia deal was found by Cheapflights users on 9/3. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure AirAsia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 10/304:15 pm -
Nonstop2h 05m
Mon 11/27:05 pm -
Nonstop2h 10m
Deal found 9/3![Philippines AirAsia logo]()
$155
This Booking.com deal was found by Cheapflights users on 9/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 11/96:30 am -
1 stop12h 30m
Thu 11/124:55 pm -
1 stop3h 50m
Deal found 9/5![Multiple Airlines logo]()
$300
This AirAsia deal was found by Cheapflights users on 9/3. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure AirAsia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 9/2311:10 pm -
Nonstop2h 10m
Mon 9/281:45 am -
Nonstop2h 10m
Deal found 9/3![Philippines AirAsia logo]()
$176
This Malaysia Airlines deal was found by Cheapflights users on 9/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Malaysia Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 11/112:15 am -
1 stop9h 15m
Tue 11/37:05 pm -
1 stop8h 35m
Deal found 9/4![Malaysia Airlines logo]()
$456
This Philippine Airlines deal was found by Cheapflights users on 9/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Philippine Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 9/297:35 am -
1 stop9h 25m
Fri 10/25:20 am -
1 stop11h 10m
Deal found 9/2![Philippine Airlines logo]()
$485
This Cathay Pacific deal was found by Cheapflights users on 9/3. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Cathay Pacific is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 9/235:40 pm -
2 stops24h 40m
Mon 9/281:15 am -
1 stop15h 15m
Deal found 9/3![Multiple Airlines logo]()
$545
This Cathay Pacific deal was found by Cheapflights users on 9/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Cathay Pacific is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 9/298:00 am -
2 stops16h 40m
Thu 10/11:15 am -
1 stop23h 00m
Deal found 9/5![Multiple Airlines logo]()
$545
This oojo deal was found by Cheapflights users on 9/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure oojo is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 10/26:35 pm -
2 stops20h 30m
Tue 10/65:20 am -
2 stops12h 05m
Deal found 9/2![Multiple Airlines logo]()
$561
This Cathay Pacific deal was found by Cheapflights users on 9/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Cathay Pacific is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 11/138:00 am -
2 stops16h 55m
Wed 11/181:05 pm -
2 stops20h 35m
Deal found 9/1![Multiple Airlines logo]()
$576
This Cathay Pacific deal was found by Cheapflights users on 9/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Cathay Pacific is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/215:30 am -
2 stops19h 10m
Wed 10/287:05 pm -
2 stops21h 30m
Deal found 9/5![Multiple Airlines logo]()
$588
Last-minute flights from Manila to Kota KinabaluDiscover last-minute flight deals from Manila to Kota Kinabalu. Data last updated September 6, 2026 and is based on user searches.
Discover last-minute flight deals from Manila to Kota Kinabalu. Data last updated September 6, 2026 and is based on user searches.
This Booking.com deal was found by Cheapflights users on 9/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 9/411:10 pm -
Nonstop2h 10m
Mon 9/71:45 am -
Nonstop2h 10m
Deal found 9/4![Philippines AirAsia logo]()
$179
This Booking.com deal was found by Cheapflights users on 9/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 9/411:10 pm -
Nonstop2h 10m
Sun 9/61:45 am -
Nonstop2h 10m
Deal found 9/4![Philippines AirAsia logo]()
$184
This AirAsia deal was found by Cheapflights users on 9/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure AirAsia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 9/1311:10 pm -
Nonstop2h 10m
Fri 9/181:45 am -
Nonstop2h 10m
Deal found 9/4![Philippines AirAsia logo]()
$159
This AirAsia deal was found by Cheapflights users on 9/3. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure AirAsia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 9/2311:10 pm -
Nonstop2h 10m
Mon 9/281:45 am -
Nonstop2h 10m
Deal found 9/3![Philippines AirAsia logo]()
$176
This Mytrip deal was found by Cheapflights users on 9/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 10/211:10 pm -
Nonstop2h 10m
Mon 10/51:45 am -
Nonstop2h 10m
Deal found 9/2![Philippines AirAsia logo]()
$150
This Kiwi.com deal was found by Cheapflights users on 9/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 10/211:10 pm -
Nonstop2h 10m
Tue 10/64:30 pm -
2 stops13h 20m
Deal found 9/2![Multiple Airlines logo]()
$222
This Mytrip deal was found by Cheapflights users on 9/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 10/511:10 pm -
Nonstop2h 10m
Sun 10/181:45 am -
Nonstop2h 10m
Deal found 9/1![Philippines AirAsia logo]()
$141
This Booking.com deal was found by Cheapflights users on 9/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 10/57:40 pm -
1 stop15h 35m
Mon 10/198:30 pm -
1 stop22h 10m
Deal found 9/1![Scoot logo]()
$195
This Mytrip deal was found by Cheapflights users on 9/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 10/57:40 pm -
1 stop15h 35m
Sun 10/181:45 am -
Nonstop2h 10m
Deal found 9/1![Multiple Airlines logo]()
$203
This Booking.com deal was found by Cheapflights users on 9/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 10/137:40 pm -
1 stop13h 10m
Mon 10/199:50 am -
1 stop8h 50m
Deal found 9/4![Scoot logo]()
$221
This AirAsia deal was found by Cheapflights users on 9/3. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure AirAsia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 10/304:15 pm -
Nonstop2h 05m
Mon 11/27:05 pm -
Nonstop2h 10m
Deal found 9/3![Philippines AirAsia logo]()
$155
One-way flights from Manila to Kota KinabaluSearch for one-way flight options from Manila to Kota Kinabalu. Find affordable one-way fares based on user searches. Data last updated September 6, 2026.
Search for one-way flight options from Manila to Kota Kinabalu. Find affordable one-way fares based on user searches. Data last updated September 6, 2026.
This Kiwi.com deal was found by Cheapflights users on 9/3. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 9/1611:10 pm -
Nonstop2h 10m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/3![Philippines AirAsia logo]()
$72
This Kiwi.com deal was found by Cheapflights users on 9/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 10/1611:10 pm -
Nonstop2h 10m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/1![Philippines AirAsia logo]()
$73
This AirAsia deal was found by Cheapflights users on 9/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure AirAsia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 1/114:15 pm -
Nonstop2h 05m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/2![Philippines AirAsia logo]()
$80
This Kiwi.com deal was found by Cheapflights users on 9/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 10/167:40 pm -
1 stop24h 05m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/1![Scoot logo]()
$87
This Kiwi.com deal was found by Cheapflights users on 9/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 12/134:15 pm -
Nonstop2h 05m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/2![Philippines AirAsia logo]()
$94
This Kiwi.com deal was found by Cheapflights users on 9/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 10/106:55 am -
1 stop12h 50m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/1![Scoot logo]()
$101
This Mytrip deal was found by Cheapflights users on 9/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 10/97:40 pm -
1 stop24h 05m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/1![Scoot logo]()
$102
This Expedia deal was found by Cheapflights users on 9/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Expedia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 12/138:40 pm -
1 stop27h 55m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/2![HK Express logo]()
$169
This Expedia deal was found by Cheapflights users on 9/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Expedia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 11/58:40 pm -
1 stop27h 55m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/4![HK Express logo]()
$175
This Kiwi.com deal was found by Cheapflights users on 9/3. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 9/167:40 pm -
2 stops14h 55m
Wed 12/3112:00 am -
Nonstop0h 00m
Deal found 9/3![Multiple Airlines logo]()
$176
Find flight deals from Manila to Kota Kinabalu
Discover tips and strategies to find the most affordable flight options for your journey from Manila (MNL) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated September 6, 2026.
Most accurate provider | FlightHub 3 stars |
|---|---|
Most trusted provider | FlightHub 3 stars |
Round-trip from | $141 (Mytrip) |
One-way from | $72 (Kiwi.com) |
Popular in | June |
Cheapest in | February |
Average price | $138 |
Good round-trip deal | $159 or less |
Cheapflights Fare Finder
Customize your flight search to find flights from Manila to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 7,457,451 searches. Data last updated September 6, 2026.
Use the filters below to find and compare flights from Manila to Kota Kinabalu that are best for you.
Fly from
Fly to
Route
Depart
Return
Cheapest round-trip
Quickest round-trip
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Mon 1/11
4:15 pm-6:20 pm
Nonstop2h 05m
Kota Kinabalu
Wed 12/31
12:00 am-12:30 am
Nonstop0h 00m
$80
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Wed 9/16
11:10 pm-1:20 am
Nonstop2h 10m
Kota Kinabalu
Wed 12/31
12:00 am-12:30 am
Nonstop0h 00m
$80
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Sun 12/13
4:15 pm-6:20 pm
Nonstop2h 05m
Kota Kinabalu
Wed 12/31
12:00 am-12:30 am
Nonstop0h 00m
$94
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Tue 11/3
6:30 am-11:10 am
1 stop28h 40m
Kota Kinabalu
Wed 12/31
12:00 am-12:30 am
Nonstop0h 00m
$125
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Fri 10/30
4:15 pm-6:20 pm
Nonstop2h 05m
Kota Kinabalu
Mon 11/2
7:05 pm-9:15 pm
Nonstop2h 10m
$155
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Thu 11/5
8:40 pm-12:35 am
1 stop27h 55m
Kota Kinabalu
Wed 12/31
12:00 am-12:30 am
Nonstop0h 00m
$175
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Sun 10/11
6:55 am-11:40 pm
2 stops16h 45m
Kota Kinabalu
Wed 12/31
12:00 am-12:30 am
Nonstop0h 00m
$176
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Wed 9/23
11:10 pm-1:20 am
Nonstop2h 10m
Kota Kinabalu
Mon 9/28
1:45 am-3:55 am
Nonstop2h 10m
$176
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Wed 9/16
7:40 pm-11:15 am
1 stop15h 35m
Kota Kinabalu
Wed 12/31
12:00 am-12:30 am
Nonstop0h 00m
$179
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Sun 12/13
7:30 pm-10:30 am
2 stops15h 00m
Kota Kinabalu
Wed 12/31
12:00 am-12:30 am
Nonstop0h 00m
$222
Showing 1-10 of 18 resultsSorted by cheapest first
Compare providers for flights from Manila to Kota Kinabalu
Provider information is updated monthly. Please note that these providers often have deals for this flight, but the availability may vary on a day-by-day basis on Cheapflights.
Use the table below to compare price accuracy, trust ratings, and cancellation policies for each provider offering flight deals from Manila to Kota Kinabalu in September.
| Provider | Price Accuracy | Trust Score* |
|---|---|---|
| Price Accuracy3 stars | Trust Score*3 stars | |
| Price Accuracy3 stars | Trust Score*3 stars | |
| Price Accuracy1 star | Trust Score*3 stars | |
| Price Accuracy2 stars | Trust Score*3 stars |
- Most accurate provider: When it comes to deals on Manila-Kota Kinabalu flights, users find the pricing of FlightHub to be most consistent on Cheapflights vs. FlightHub Users can find the same prices on Manila-Kota Kinabalu flight deals on Cheapflights vs. FlightHub >95% of the time. Price accuracy is based on data collected from Manila-Kota Kinabalu flight searches over the past month and is updated monthly.
- Most trusted provider: When it comes to deals on Manila-Kota Kinabalu flights, Cheapflights users trust FlightHub the most. FlightHub has received a user feedback score of 3 out of 3 stars (3 being the best), meaning they have been trusted the most by Cheapflights users looking for Manila-Kota Kinabalu flight deals. Provider user feedback score is based on Cheapflights searches over the past month and is updated monthly.
Best time to book a flight from Manila to Kota Kinabalu
Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Manila with our price prediction graph.
MNL-BKI
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.
Cheapflights Insights
Everything you need to know about your flight from Manila to Kota Kinabalu
Prices
Delays
How far ahead should I book a flight from Manila to Kota Kinabalu?
The best time to book flights from Manila to Kota Kinabalu is 46 days before your desired departure date. The cost of your flight will likely increase significantly if you book two weeks in advance of your flight.
What is the cheapest month to book a flight from Manila to Kota Kinabalu?
Currently, February is the cheapest month in which you can book a flight from Manila to Kota Kinabalu (average of $109). Flying from Manila to Kota Kinabalu in June is currently the most expensive (average of $164). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.
What is the cheapest time of day to fly from MNL to BKI?
Find hourly flight availability from Manila to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated September 6, 2026.
When flying from Manila to Kota Kinabalu, the time of day you decide to fly out makes little to no difference towards the overall price you’ll pay on tickets.
How often are flights from Manila to Kota Kinabalu delayed?
About 19% of weekly flights between Manila and Kota Kinabalu have experienced delays in the past year, with the average delay time being 132 minutes.
What is the most punctual flight time for Manila to Kota Kinabalu flights?
Historically, flights departing at night are less likely to be delayed, whereas flights leaving in the early afternoon tend to experience delays more often.
What day of the week experiences the fewest flight delays on this route?
Tuesday tends to have the lowest number of delays on this route, whereas Saturday has historically faced a higher average of delays compared to other days of the week.
Which airline has the best punctuality record on Manila to Kota Kinabalu flights?
Over the last year, AirAsia have had the lowest number of delays on this route, with just 15% of flights being delayed.
Reviews of airlines servicing Kota Kinabalu
Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated September 6, 2026.
See what other customers who have flown with Philippines AirAsia from Manila to Kota Kinabalu have to say. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
Entertainment
5.7
Overall
6.8
Comfort
6.7
Crew
7.6
Food
6.4
Boarding
6.8
Reviews
1 / 4
6.0
GoodEdward,Feb 2024
DVO - MNL
Entertainment
5.7
Overall
6.8
Comfort
6.7
Crew
7.6
Food
6.4
Boarding
6.8
Reviews
1 / 4
6.0
GoodEdward,Feb 2024
DVO - MNL
Related info for your journey
Find useful and relevant information for your journey from Manila to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.
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Other flights to Kota Kinabalu
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Top airline flying from Manila to Kota Kinabalu
Discover the top airline that operate flights from Manila to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 7,457,451 searches. Data last updated September 6, 2026.
| Airline | Cheapest | Average | Flexibility | On-time |
|---|---|---|---|---|
| Cheapest$98 | Average$122 | FlexibilityNo cancel fee | On-time53% |