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Juneau

$426+ Cheap flights from San Diego to Juneau (SAN - JNU)

This is the cheapest round-trip flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 10/9. Fares are subject to change and may not be available on all flights or dates of travel.
SAN — JNU
Oct 17 — Oct 241
Fri 10/17
Fri 10/24
1 adult, Economy
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Cheap flight deals from San Diego to Juneau

Discover tips and strategies to find the most affordable flight options for your journey from San Diego (SAN) to Juneau (JNU). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated September 17, 2025.

Round-trip from

$426
(Delta)

Popular in

December

Cheapest in

September

Average price

$525
From San Diego to Juneau Intl
Search Deals
Highest demand for flights based on searches. 12% potential increase in price ($90 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 2% potential price decrease ($14 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in September 2025
Search Deals

Find flight deals from San Diego to Juneau

Cheapest flights from San Diego to Juneau
Explore the most affordable flight options available from San Diego to Juneau. Find the lowest fares from popular airlines and budget airlines, with prices last updated on September 17, 2025.

This Delta deal was found by Cheapflights users on 9/16. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Delta is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 10/96:20 amSAN - JNU
2 stops12h 13mDelta
Wed 10/157:07 amJNU - SAN
1 stop14h 24mDelta
Deal found 9/16$426
This Alaska Airlines deal was found by Cheapflights users on 9/16. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 10/97:50 pmSAN - JNU
2 stops26h 40mAlaska Airlines
Wed 10/157:12 amJNU - SAN
2 stops14h 01mAlaska Airlines
Deal found 9/16$493
This Delta deal was found by Cheapflights users on 9/14. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Delta is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 10/116:15 amSAN - JNU
1 stop12h 18mDelta
Mon 10/207:07 amJNU - SAN
1 stop6h 04mDelta
Deal found 9/14$512
This Alaska Airlines deal was found by Cheapflights users on 9/14. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 10/116:25 pmSAN - JNU
1 stop15h 16mAlaska Airlines
Mon 10/202:08 pmJNU - SAN
2 stops17h 07mAlaska Airlines
Deal found 9/14$528
This Delta deal was found by Cheapflights users on 9/15. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Delta is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 9/3011:03 amSAN - JNU
1 stop8h 10mDelta
Sat 10/47:05 amJNU - SAN
1 stop6h 30mDelta
Deal found 9/15$541

Cheapflights Fare Finder

 
Customize your flight search to find flights from San Diego to Juneau that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated September 17, 2025.
Use the filters below to find and compare flights from San Diego to Juneau that are best for you.

Fly from

San Diego

Fly to

Juneau

Route

Depart

Return

Price

San DiegoJuneau

SAN - JNU

SANJNU

San Diego

Thu 10/9

6:20 am-5:33 pm

2 stops12h 13m

Juneau Intl

Wed 10/15

7:07 am-10:31 pm

1 stop14h 24m

$426

San DiegoJuneau

SAN - JNU

SANJNU

San Diego

Sat 10/11

6:20 am-5:33 pm

2 stops12h 13m

Juneau Intl

Mon 10/20

7:07 am-2:11 pm

1 stop6h 04m

$426

San DiegoJuneau

SAN - JNU

SANJNU

San Diego

Thu 10/9

7:50 pm-9:30 pm

2 stops26h 40m

Juneau Intl

Wed 10/15

7:12 am-10:13 pm

2 stops14h 01m

$493

San DiegoJuneau

SAN - JNU

SANJNU

San Diego

Sat 10/11

6:25 pm-9:30 pm

2 stops28h 05m

Juneau Intl

Mon 10/20

7:12 am-8:53 pm

2 stops12h 41m

$512

San DiegoJuneau

SAN - JNU

SANJNU

San Diego

Tue 9/30

11:03 am-6:13 pm

1 stop8h 10m

Juneau Intl

Sat 10/4

7:05 am-2:35 pm

1 stop6h 30m

$541

Flights are sorted by cheapest round-trip flights first.

Deals found on 9/16

Best time to book a flight from San Diego to Juneau

Have a flexible travel schedule? Discover the best time to fly to Juneau from San Diego with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Reviews of airlines servicing Juneau

Get insights into the airlines that provide service to Juneau. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Juneau. Reviews last updated September 17, 2025.
Get a feel of what it's like to fly with Alaska Airlines and Delta from San Diego to Juneau by reading reviews from past customers. Users have also rated airlines in terms of entertainment options, comfort, food, crew/service, and boarding process.
Alaska Airlines
8.0
Very good
10,000 reviews

Entertainment

7.1

Food

7.1

Comfort

7.8

Overall

8.0

Boarding

8.1

Crew

8.5

Reviews

1 / 20
6.0
Good

Hannah,Aug 2025

SFO - SAN

Ticket said TSA pre check, but then the TSA agent said that Alaska Airlines has not actually entered the pre check information for the ticket, so I had to use regular security. During boarding, I have a disability and need to board early. The Alaska Airlines employee announced disability boarding, but then immediately announced 2 other groups to board, so I still had to fight the crowds. On the plane, the stewardess was brusk and rude. Seats were very uncomfortable, especially on lower back.
Alaska Airlines
8.0
Very good
10,000 reviews
Alaska Airlines
8.0
Very good
10,000 reviews

Entertainment

7.1

Food

7.1

Comfort

7.8

Overall

8.0

Boarding

8.1

Crew

8.5

Reviews

1 / 20
6.0
Good

Hannah,Aug 2025

SFO - SAN

Ticket said TSA pre check, but then the TSA agent said that Alaska Airlines has not actually entered the pre check information for the ticket, so I had to use regular security. During boarding, I have a disability and need to board early. The Alaska Airlines employee announced disability boarding, but then immediately announced 2 other groups to board, so I still had to fight the crowds. On the plane, the stewardess was brusk and rude. Seats were very uncomfortable, especially on lower back.
Delta
8.0
Very good
7,961 reviews
Alaska Airlines
8.0
Very good
10,000 reviews

Entertainment

7.1

Food

7.1

Comfort

7.8

Overall

8.0

Boarding

8.1

Crew

8.5

Reviews

1 / 20
6.0
Good

Hannah,Aug 2025

SFO - SAN

Ticket said TSA pre check, but then the TSA agent said that Alaska Airlines has not actually entered the pre check information for the ticket, so I had to use regular security. During boarding, I have a disability and need to board early. The Alaska Airlines employee announced disability boarding, but then immediately announced 2 other groups to board, so I still had to fight the crowds. On the plane, the stewardess was brusk and rude. Seats were very uncomfortable, especially on lower back.

Related info for your journey

Find useful and relevant information for your journey from San Diego to Juneau. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How long is the flight from San Diego to Juneau?

    Airlines like Delta fly from San Diego to Juneau in about 12h 13m. The time it takes to get you to your destination can typically vary by up to . The distance between San Diego and Juneau is about 1945 mi.

  • What are the cheapest airlines flying from San Diego to Juneau round-trip?

    Currently priced at $465, Delta will fly you from San Diego to Juneau and back. In addition to Delta, many other airlines offer competitively priced options for your trip. Check Cheapflights for deals on Alaska Airlines for as low as $496. Delta is 28% cheaper than the average price of flights available within the next 90 days to this destination.

  • Can I find deals for flights from San Diego to Juneau that include hotel bookings?

    Yes. In addition to deals on San Diego to Juneau flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from San Diego to Juneau?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from San Diego to Juneau.

  • Can I find deals for business class flights from San Diego to Juneau?

    Yes. Cheapflights offers flight deals from San Diego to Juneau by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from San Diego to Juneau?

    Currently, September is the cheapest month in which you can book a flight from San Diego to Juneau (average of $399). Flying from San Diego to Juneau in July is currently the most expensive (average of $690). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

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Top 2 airlines flying from San Diego to Juneau

Discover the top 2 airlines that operate flights from San Diego to Juneau. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated September 17, 2025.
AirlineCheapestAverageFlexibilityOn-time
DeltaCheapest$465Average$523FlexibilityNo cancel feeOn-timeN/A
Alaska AirlinesCheapest$496Average$665FlexibilityNo cancel feeOn-time75%

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