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Guayaquil

$122+ Cheap flights from San Juan to Guayaquil (GYE)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 8/5. Fares are subject to change and may not be available on all flights or dates of travel.
SJU — GYE
Aug 6 — Aug 131
Thu 8/6
Thu 8/13
1 adult, Economy
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Cheap flight deals from San Juan to Guayaquil

Cheapest flights from San Juan to Guayaquil
Explore the most affordable flight options available from San Juan to Guayaquil. Find the lowest fares from popular airlines and budget airlines, with prices last updated on July 7, 2026.

This Copa Airlines deal was found by Cheapflights users on 7/3. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Copa Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 9/46:16 pm
SJU
-
GYE
1 stop20h 18m
Copa Airlines
Tue 9/86:28 pm
GYE
-
SJU
1 stop20h 46m
Copa Airlines
Deal found 7/3$285
This Copa Airlines deal was found by Cheapflights users on 7/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Copa Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 8/36:17 pm
SJU
-
GYE
1 stop18h 05m
Copa Airlines
Sun 8/236:28 pm
GYE
-
SJU
1 stop20h 46m
Copa Airlines
Deal found 7/4$411
This deal was found by Cheapflights users on 7/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 9/56:35 pm
SJU
-
GYE
1 stop5h 55m
Avianca
Tue 9/89:10 am
GYE
-
SJU
1 stop7h 00m
Avianca
Deal found 7/4$461
This Copa Airlines deal was found by Cheapflights users on 7/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Copa Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 8/66:17 pm
SJU
-
GYE
1 stop18h 05m
Copa Airlines
Sun 8/912:22 pm
GYE
-
SJU
1 stop9h 07m
Copa Airlines
Deal found 7/4$519
This Avianca deal was found by Cheapflights users on 7/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Avianca is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 8/36:35 pm
SJU
-
GYE
1 stop15h 20m
Avianca
Sat 8/223:30 am
GYE
-
SJU
1 stop12h 40m
Avianca
Deal found 7/2$540
This Copa Airlines deal was found by Cheapflights users on 7/3. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Copa Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 7/45:34 am
SJU
-
GYE
1 stop6h 48m
Copa Airlines
Sat 7/42:36 pm
GYE
-
SJU
1 stop6h 53m
Copa Airlines
Deal found 7/3$542
This Kiwi.com deal was found by Cheapflights users on 7/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 8/66:35 pm
SJU
-
GYE
1 stop5h 55m
Multiple Airlines
Sun 8/96:28 pm
GYE
-
SJU
2 stops29h 13m
Multiple Airlines
Deal found 7/4$567
This United Airlines deal was found by Cheapflights users on 7/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 9/31:00 am
SJU
-
GYE
2 stops23h 37m
United Airlines
Tue 9/812:22 pm
GYE
-
SJU
2 stops31h 16m
United Airlines
Deal found 7/4$598
This United deal was found by Cheapflights users on 7/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 9/31:00 am
SJU
-
GYE
2 stops44h 52m
Multiple Airlines
Tue 9/810:05 am
GYE
-
SJU
2 stops36h 45m
Multiple Airlines
Deal found 7/2$605
This United Airlines deal was found by Cheapflights users on 7/4. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 8/67:00 am
SJU
-
GYE
2 stops17h 38m
United Airlines
Sun 8/92:37 pm
GYE
-
SJU
2 stops37h 52m
United Airlines
Deal found 7/4$607
This Kiwi.com deal was found by Cheapflights users on 7/2. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 9/59:00 pm
SJU
-
GYE
2 stops14h 34m
Multiple Airlines
Tue 9/86:00 am
GYE
-
SJU
1 stop9h 14m
Multiple Airlines
Deal found 7/2$609

Find flight deals from San Juan to Guayaquil

Discover tips and strategies to find the most affordable flight options for your journey from San Juan (PR1) to Guayaquil (GYE). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated July 7, 2026.

Round-trip from

$285
(Copa Airlines)

One-way from

$122
(Copa Airlines)

Popular in

April

Cheapest in

November

Average price

$539
From San Juan to Guayaquil Jose Joaquin de Olmedo
Search Deals
One-way flight from San Juan to Guayaquil Jose Joaquin de Olmedo
Search Deals
Highest demand for flights based on searches. 11% potential increase in price ($59 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 2% potential price decrease ($12 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in July 2026
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from San Juan to Guayaquil that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated July 7, 2026.
Use the filters below to find and compare flights from San Juan to Guayaquil that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Fri 9/4

6:16 pm-1:34 pm

1 stop20h 18m

Guayaquil Jose Joaquin de Olmedo

Tue 9/8

6:28 pm-4:14 pm

1 stop20h 46m

$285

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Fri 8/7

6:17 pm-12:02 am

1 stop6h 45m

Guayaquil Jose Joaquin de Olmedo

Mon 8/10

6:28 pm-4:14 pm

1 stop20h 46m

$411

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Wed 9/2

6:16 pm-1:34 pm

1 stop20h 18m

Guayaquil Jose Joaquin de Olmedo

Sun 9/6

4:13 am-4:14 pm

1 stop11h 01m

$411

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Thu 8/6

6:17 pm-11:22 am

1 stop18h 05m

Guayaquil Jose Joaquin de Olmedo

Mon 8/10

6:28 pm-4:14 pm

1 stop20h 46m

$411
Quickest round-trip

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Thu 8/6

6:17 pm-11:22 am

1 stop18h 05m

Guayaquil Jose Joaquin de Olmedo

Sun 8/9

12:22 pm-10:29 pm

1 stop9h 07m

$519

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Mon 8/3

6:35 pm-8:55 am

1 stop15h 20m

Guayaquil Jose Joaquin de Olmedo

Sat 8/22

3:30 am-5:10 pm

1 stop12h 40m

$540

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Sat 9/5

6:45 pm-8:52 pm

2 stops27h 07m

Guayaquil Jose Joaquin de Olmedo

Mon 9/7

3:30 am-11:50 pm

2 stops19h 20m

$605

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Wed 8/5

2:05 am-5:31 pm

2 stops16h 26m

Guayaquil Jose Joaquin de Olmedo

Mon 8/10

2:37 pm-11:50 pm

2 stops32h 13m

$607

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Mon 8/3

7:00 am-8:53 pm

2 stops14h 53m

Guayaquil Jose Joaquin de Olmedo

Sun 8/23

2:37 pm-1:45 pm

2 stops22h 08m

$607

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Fri 8/7

7:00 am-11:38 pm

2 stops17h 38m

Guayaquil Jose Joaquin de Olmedo

Mon 8/10

8:28 am-8:38 pm

2 stops35h 10m

$607

Flights are sorted by cheapest round-trip flights first.

Deals found on 7/6

Showing 1-10 of 16 resultsSorted by cheapest first
1
2

Best time to book a flight from San Juan to Guayaquil

Have a flexible travel schedule? Discover the best time to fly to Guayaquil from San Juan with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from San Juan to Guayaquil

What is the cheapest month to book a flight from San Juan to Guayaquil?

Currently, April is the cheapest month in which you can book a flight from San Juan to Guayaquil (average of $110). Flying from San Juan to Guayaquil in June is currently the most expensive (average of $475). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

How much does it cost to fly round-trip from San Juan to Guayaquil?

Reviews of airlines servicing Guayaquil

Get insights into the airlines that provide service to Guayaquil. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Guayaquil. Reviews last updated July 7, 2026.
Get a feel of what it's like to fly with Copa Airlines and Avianca from San Juan to Guayaquil by reading reviews from past customers. Users have also rated airlines in terms of entertainment options, comfort, food, crew/service, and boarding process.
Copa Airlines
7.6
Good
1,568 reviews

Boarding

7.8

Crew

8.1

Comfort

7.4

Overall

7.6

Entertainment

6.8

Food

6.9

Reviews

1 / 20
6.0
Good

Maria,Dec 2025

MIA - PTY

The second flight to salta Argentina was terrible..the plain is old no entertainment no good food no nothing
Copa Airlines
7.6
Good
1,568 reviews
Copa Airlines
7.6
Good
1,568 reviews

Boarding

7.8

Crew

8.1

Comfort

7.4

Overall

7.6

Entertainment

6.8

Food

6.9

Reviews

1 / 20
6.0
Good

Maria,Dec 2025

MIA - PTY

The second flight to salta Argentina was terrible..the plain is old no entertainment no good food no nothing
Avianca
6.5
Okay
2,521 reviews
Copa Airlines
7.6
Good
1,568 reviews

Boarding

7.8

Crew

8.1

Comfort

7.4

Overall

7.6

Entertainment

6.8

Food

6.9

Reviews

1 / 20
6.0
Good

Maria,Dec 2025

MIA - PTY

The second flight to salta Argentina was terrible..the plain is old no entertainment no good food no nothing

Related info for your journey

Find useful and relevant information for your journey from San Juan to Guayaquil. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Guayaquil from San Juan?

    Most people fly into Guayaquil Jose Joaquin de Olmedo (GYE) if they book a flight to Guayaquil from San Juan. On average, Jose Joaquin de Olmedo has 0 inbound flights from San Juan per day from 2 airlines. Guayaquil Jose Joaquin de Olmedo is conveniently located just 2.5 mi from Guayaquil’s city center.

  • How long is the flight from San Juan to Guayaquil?

    For as low as $285, Copa Airlines can have you in Guayaquil from San Juan in 20h 18m. The distance from San Juan to Guayaquil is about 1706 mi.

  • What are the cheapest airlines flying from San Juan to Guayaquil round-trip?

    Currently priced at $422, Copa Airlines will fly you from San Juan to Guayaquil and back. In addition to Copa Airlines, many other airlines offer competitively priced options for your trip. Check Cheapflights for deals on Avianca for as low as $447. These flights start at 12% lower than the current average price 3 months from now.

  • Can I find deals for flights from San Juan to Guayaquil that include hotel bookings?

    Yes. In addition to deals on San Juan to Guayaquil flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from San Juan to Guayaquil?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from San Juan to Guayaquil.

  • Can I find deals for business class flights from San Juan to Guayaquil?

    Yes. Cheapflights offers flight deals from San Juan to Guayaquil by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from San Juan to Guayaquil?

    Currently, April is the cheapest month in which you can book a flight from San Juan to Guayaquil (average of $110). Flying from San Juan to Guayaquil in June is currently the most expensive (average of $475). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Complete your trip

Complete your trip to Guayaquil by adding a car rental and/or hotel reservation to your travel itinerary.
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Top 2 airlines flying from San Juan to Guayaquil

Discover the top 2 airlines that operate flights from San Juan to Guayaquil. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated July 7, 2026.
AirlineCheapestAverageFlexibilityOn-time
Copa AirlinesCheapest$422Average$586FlexibilityNo cancel feeOn-time70%
AviancaCheapest$447Average$539FlexibilityNo cancel feeOn-time71%

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