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Guayaquil

$193+ Cheap flights from San Juan to Guayaquil (GYE)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 5/6. Fares are subject to change and may not be available on all flights or dates of travel.
SJU — GYE
May 10 — May 171
Sun 5/10
Sun 5/17
1 adult, Economy
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Cheap flight deals from San Juan to Guayaquil

Cheapest flights from San Juan to Guayaquil
Explore the most affordable flight options available from San Juan to Guayaquil. Find the lowest fares from popular airlines and budget airlines, with prices last updated on April 10, 2026.

This Mytrip deal was found by Cheapflights users on 4/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 4/172:09 am
SJU
-
GYE
2 stops28h 11m
Multiple Airlines
Fri 4/2411:59 pm
GYE
-
SJU
1 stop18h 23m
Multiple Airlines
Deal found 4/6$432
This Mytrip deal was found by Cheapflights users on 4/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 4/91:39 am
SJU
-
GYE
3 stops32h 16m
Multiple Airlines
Sun 4/129:05 am
GYE
-
SJU
2 stops32h 50m
Multiple Airlines
Deal found 4/6$498
This FlightHub deal was found by Cheapflights users on 4/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 4/1012:55 pm
SJU
-
GYE
1 stop11h 09m
Spirit Airlines
Sun 4/1211:59 pm
GYE
-
SJU
1 stop10h 50m
Spirit Airlines
Deal found 4/6$508
This Kiwi.com deal was found by Cheapflights users on 4/9. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 5/207:30 am
SJU
-
GYE
2 stops40h 34m
Multiple Airlines
Sun 5/2411:59 pm
GYE
-
SJU
1 stop18h 00m
Multiple Airlines
Deal found 4/9$512
This United Airlines deal was found by Cheapflights users on 4/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 4/146:45 pm
SJU
-
GYE
2 stops27h 09m
United Airlines
Sat 4/188:28 am
GYE
-
SJU
2 stops26h 36m
United Airlines
Deal found 4/5$518
This Priceline deal was found by Cheapflights users on 4/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Priceline is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 6/48:55 pm
SJU
-
GYE
1 stop18h 55m
JetBlue
Mon 6/1512:25 pm
GYE
-
SJU
1 stop10h 34m
JetBlue
Deal found 4/7$527
This Justfly.com deal was found by Cheapflights users on 4/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Justfly.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 6/58:55 pm
SJU
-
GYE
1 stop18h 55m
JetBlue
Mon 6/1512:25 pm
GYE
-
SJU
1 stop10h 34m
JetBlue
Deal found 4/5$532
This Kiwi.com deal was found by Cheapflights users on 4/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 6/118:04 pm
SJU
-
GYE
2 stops28h 26m
Multiple Airlines
Tue 6/237:05 pm
GYE
-
SJU
1 stop21h 31m
Multiple Airlines
Deal found 4/7$545

Find flight deals from San Juan to Guayaquil

Discover tips and strategies to find the most affordable flight options for your journey from San Juan (PR1) to Guayaquil (GYE). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated April 10, 2026.

Round-trip from

$527
(Priceline)

One-way from

$193
(Kiwi.com)

Popular in

April

Cheapest in

November

Average price

$603
From San Juan to Guayaquil Jose Joaquin de Olmedo
Search Deals
One-way flight from San Juan to Guayaquil Jose Joaquin de Olmedo
Search Deals
Highest demand for flights based on searches. 11% potential increase in price ($62 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 3% potential price decrease ($14 potential savings vs. average RT price).
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Average for round-trip flights in April 2026
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Cheapflights Fare Finder

 
Customize your flight search to find flights from San Juan to Guayaquil that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated April 10, 2026.
Use the filters below to find and compare flights from San Juan to Guayaquil that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Fri 6/5

8:55 pm-2:50 pm

1 stop18h 55m

Guayaquil Jose Joaquin de Olmedo

Mon 6/15

12:25 pm-11:59 pm

1 stop10h 34m

$532

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Wed 5/6

7:00 am-11:36 pm

2 stops41h 36m

Guayaquil Jose Joaquin de Olmedo

Wed 5/13

2:43 pm-8:38 pm

2 stops28h 55m

$547
Quickest round-trip

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Fri 6/12

5:28 am-2:25 pm

1 stop9h 57m

Guayaquil Jose Joaquin de Olmedo

Tue 6/23

12:25 pm-11:59 pm

1 stop10h 34m

$547

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Wed 4/29

7:00 am-11:38 pm

2 stops17h 38m

Guayaquil Jose Joaquin de Olmedo

Fri 5/8

8:28 am-12:04 pm

2 stops26h 36m

$552

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Sat 5/9

1:05 pm-11:30 pm

1 stop11h 25m

Guayaquil Jose Joaquin de Olmedo

Sat 6/13

3:30 am-5:10 pm

1 stop12h 40m

$560

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Fri 6/5

6:35 pm-8:55 am

1 stop15h 20m

Guayaquil Jose Joaquin de Olmedo

Mon 6/15

3:30 am-11:25 am

1 stop6h 55m

$560

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Sat 6/27

1:05 pm-11:30 pm

1 stop11h 25m

Guayaquil Jose Joaquin de Olmedo

Fri 7/3

3:30 am-5:10 pm

1 stop12h 40m

$560

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Sun 6/28

6:35 pm-8:55 am

1 stop15h 20m

Guayaquil Jose Joaquin de Olmedo

Fri 7/3

3:30 am-11:25 am

1 stop6h 55m

$560

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Tue 5/19

12:59 am-8:55 am

3 stops32h 56m

Guayaquil Jose Joaquin de Olmedo

Sun 5/24

11:59 pm-6:59 pm

1 stop18h 00m

$561

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Wed 5/6

5:27 am-11:20 am

1 stop6h 53m

Guayaquil Jose Joaquin de Olmedo

Wed 5/13

6:00 am-10:24 pm

1 stop15h 24m

$562

Flights are sorted by cheapest round-trip flights first.

Deals found on 4/6

Showing 1-10 of 17 resultsSorted by cheapest first
1
2

Best time to book a flight from San Juan to Guayaquil

Have a flexible travel schedule? Discover the best time to fly to Guayaquil from San Juan with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from San Juan to Guayaquil

What is the cheapest month to book a flight from San Juan to Guayaquil?

Currently, February is the cheapest month in which you can book a flight from San Juan to Guayaquil (average of $122). Flying from San Juan to Guayaquil in June is currently the most expensive (average of $467). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

How much does it cost to fly round-trip from San Juan to Guayaquil?

Reviews of airlines servicing Guayaquil

Get insights into the airlines that provide service to Guayaquil. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Guayaquil. Reviews last updated April 10, 2026.
Get a feel of what it's like to fly with Copa Airlines and Avianca from San Juan to Guayaquil by reading reviews from past customers. Users have also rated airlines in terms of entertainment options, comfort, food, crew/service, and boarding process.
Copa Airlines
7.5
Good
1,575 reviews

Entertainment

6.8

Boarding

7.7

Overall

7.5

Comfort

7.4

Food

6.8

Crew

8.1

Reviews

1 / 20
6.0
Good

Maria,Dec 2025

MIA - PTY

The second flight to salta Argentina was terrible..the plain is old no entertainment no good food no nothing
Copa Airlines
7.5
Good
1,575 reviews
Copa Airlines
7.5
Good
1,575 reviews

Entertainment

6.8

Boarding

7.7

Overall

7.5

Comfort

7.4

Food

6.8

Crew

8.1

Reviews

1 / 20
6.0
Good

Maria,Dec 2025

MIA - PTY

The second flight to salta Argentina was terrible..the plain is old no entertainment no good food no nothing
Avianca
6.5
Okay
2,503 reviews
Copa Airlines
7.5
Good
1,575 reviews

Entertainment

6.8

Boarding

7.7

Overall

7.5

Comfort

7.4

Food

6.8

Crew

8.1

Reviews

1 / 20
6.0
Good

Maria,Dec 2025

MIA - PTY

The second flight to salta Argentina was terrible..the plain is old no entertainment no good food no nothing

Related info for your journey

Find useful and relevant information for your journey from San Juan to Guayaquil. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Guayaquil from San Juan?

    Most people fly into Guayaquil Jose Joaquin de Olmedo (GYE) if they book a flight to Guayaquil from San Juan. On average, Jose Joaquin de Olmedo has 0 inbound flights from San Juan per day from 2 airlines. Guayaquil Jose Joaquin de Olmedo is conveniently located just 2.5 mi from Guayaquil’s city center.

  • How long is the flight from San Juan to Guayaquil?

    For as low as $560, JetBlue can have you in Guayaquil from San Juan in 15h 20m. The distance from San Juan to Guayaquil is about 1706 mi. Both multi-stop and nonstop flights can be found to your destination and back.

  • What are the cheapest airlines flying from San Juan to Guayaquil round-trip?

    Currently priced at $324, Avianca will fly you from San Juan to Guayaquil and back. In addition to Avianca, many other airlines offer competitively priced options for your trip. Check Cheapflights for deals on Copa Airlines for as low as $412. These flights start at 28% lower than the current average price 3 months from now.

  • Can I find deals for flights from San Juan to Guayaquil that include hotel bookings?

    Yes. In addition to deals on San Juan to Guayaquil flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from San Juan to Guayaquil?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from San Juan to Guayaquil.

  • Can I find deals for business class flights from San Juan to Guayaquil?

    Yes. Cheapflights offers flight deals from San Juan to Guayaquil by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from San Juan to Guayaquil?

    Currently, February is the cheapest month in which you can book a flight from San Juan to Guayaquil (average of $122). Flying from San Juan to Guayaquil in June is currently the most expensive (average of $467). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

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Complete your trip

Complete your trip to Guayaquil by adding a car rental and/or hotel reservation to your travel itinerary.
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Top 2 airlines flying from San Juan to Guayaquil

Discover the top 2 airlines that operate flights from San Juan to Guayaquil. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated April 10, 2026.
AirlineCheapestAverageFlexibilityOn-time
AviancaCheapest$324Average$516FlexibilityNo cancel feeOn-time71%
Copa AirlinesCheapest$412Average$550FlexibilityNo cancel feeOn-time70%

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