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Guayaquil

$155+ Cheap flights from San Juan to Guayaquil (GYE)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 4/7. Fares are subject to change and may not be available on all flights or dates of travel.
SJU — GYE
Apr 21 — Apr 281
Tue 4/21
Tue 4/28
1 adult, Economy
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Cheap flight deals from San Juan to Guayaquil

Cheapest flights from San Juan to Guayaquil
Explore the most affordable flight options available from San Juan to Guayaquil. Find the lowest fares from popular airlines and budget airlines, with prices last updated on March 22, 2026.

This Booking.com deal was found by Cheapflights users on 3/21. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 4/1112:55 pm
SJU
-
GYE
1 stop11h 09m
Spirit Airlines
Sat 4/1811:59 pm
GYE
-
SJU
1 stop18h 23m
Spirit Airlines
Deal found 3/21$330
This Trip.com deal was found by Cheapflights users on 3/21. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Trip.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 4/116:00 am
SJU
-
GYE
2 stops27h 55m
Multiple Airlines
Sat 4/186:50 pm
GYE
-
SJU
3 stops51h 53m
Multiple Airlines
Deal found 3/21$495
This United Airlines deal was found by Cheapflights users on 3/19. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 4/226:45 pm
SJU
-
GYE
2 stops23h 46m
United Airlines
Sat 4/2512:22 pm
GYE
-
SJU
2 stops22h 42m
United Airlines
Deal found 3/19$527
This Orbitz deal was found by Cheapflights users on 3/20. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Orbitz is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 5/1912:15 pm
SJU
-
GYE
1 stop27h 11m
JetBlue
Fri 5/2912:59 pm
GYE
-
SJU
1 stop10h 20m
JetBlue
Deal found 3/20$538
This Avianca deal was found by Cheapflights users on 3/22. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Avianca is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 6/276:35 pm
SJU
-
GYE
1 stop15h 20m
Avianca
Fri 7/33:30 am
GYE
-
SJU
1 stop6h 55m
Avianca
Deal found 3/22$540
This Copa Airlines deal was found by Cheapflights users on 3/17. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Copa Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 11/175:37 am
SJU
-
GYE
1 stop8h 57m
Copa Airlines
Thu 11/262:35 pm
GYE
-
SJU
1 stop6h 53m
Copa Airlines
Deal found 3/17$542
This Avianca deal was found by Cheapflights users on 3/18. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Avianca is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 6/286:35 pm
SJU
-
GYE
1 stop5h 55m
Avianca
Sat 7/410:05 am
GYE
-
SJU
1 stop6h 05m
Avianca
Deal found 3/18$550
This Copa Airlines deal was found by Cheapflights users on 3/20. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Copa Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 6/126:17 pm
SJU
-
GYE
1 stop6h 44m
Copa Airlines
Tue 6/238:27 am
GYE
-
SJU
1 stop6h 47m
Copa Airlines
Deal found 3/20$552
This Copa Airlines deal was found by Cheapflights users on 3/22. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Copa Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 3/226:14 pm
SJU
-
GYE
1 stop6h 41m
Copa Airlines
Sat 3/282:35 pm
GYE
-
SJU
1 stop6h 54m
Copa Airlines
Deal found 3/22$561

Find flight deals from San Juan to Guayaquil

Discover tips and strategies to find the most affordable flight options for your journey from San Juan (PR1) to Guayaquil (GYE). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated March 22, 2026.

Round-trip from

$330
(Booking.com)

One-way from

$155
(Kiwi.com)

Popular in

June

Cheapest in

November

Average price

$429
From San Juan to Guayaquil Jose Joaquin de Olmedo
Search Deals
One-way flight from San Juan to Guayaquil Jose Joaquin de Olmedo
Search Deals
Highest demand for flights based on searches. 8% potential increase in price ($39 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 2% potential price decrease ($12 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in March 2026
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from San Juan to Guayaquil that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated March 22, 2026.
Use the filters below to find and compare flights from San Juan to Guayaquil that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Sat 4/11

12:55 pm-11:04 pm

1 stop11h 09m

Guayaquil Jose Joaquin de Olmedo

Sat 4/18

11:59 pm-7:22 pm

1 stop18h 23m

$330

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Tue 5/19

7:00 am-5:29 pm

2 stops35h 29m

Guayaquil Jose Joaquin de Olmedo

Fri 5/29

2:43 pm-12:04 pm

2 stops20h 21m

$527

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Wed 4/22

6:45 pm-11:38 pm

2 stops29h 53m

Guayaquil Jose Joaquin de Olmedo

Sat 4/25

12:22 pm-8:38 pm

2 stops31h 16m

$527

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Fri 5/8

7:00 am-5:29 pm

2 stops35h 29m

Guayaquil Jose Joaquin de Olmedo

Fri 5/22

8:28 am-11:50 pm

2 stops38h 22m

$527

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Sun 6/7

2:05 am-5:29 pm

2 stops40h 24m

Guayaquil Jose Joaquin de Olmedo

Tue 6/16

2:36 pm-5:29 am

2 stops37h 53m

$527

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Tue 4/7

5:57 am-11:22 am

1 stop6h 25m

Guayaquil Jose Joaquin de Olmedo

Sun 4/12

6:00 am-10:24 pm

1 stop15h 24m

$542
Quickest round-trip

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Fri 6/12

6:17 pm-12:01 am

1 stop6h 44m

Guayaquil Jose Joaquin de Olmedo

Tue 6/23

8:27 am-4:14 pm

1 stop6h 47m

$552

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Tue 8/11

6:00 am-11:30 pm

2 stops18h 30m

Guayaquil Jose Joaquin de Olmedo

Tue 8/18

7:05 pm-1:43 pm

1 stop17h 38m

$561
Cheapest one-way
Quickest one-way

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Tue 4/7

11:03 am-11:04 pm

3 stops37h 01m

$212

Flights are sorted by cheapest round-trip flights first.

Deals found on 3/21

Sorted by cheapest first

Best time to book a flight from San Juan to Guayaquil

Have a flexible travel schedule? Discover the best time to fly to Guayaquil from San Juan with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from San Juan to Guayaquil

What is the cheapest month to book a flight from San Juan to Guayaquil?

Currently, February is the cheapest month in which you can book a flight from San Juan to Guayaquil (average of $122). Flying from San Juan to Guayaquil in January is currently the most expensive (average of $450). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

Reviews of airlines servicing Guayaquil

Get insights into the airlines that provide service to Guayaquil. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Guayaquil. Reviews last updated March 22, 2026.
Get a feel of what it's like to fly with Copa Airlines and Avianca from San Juan to Guayaquil by reading reviews from past customers. Users have also rated airlines in terms of entertainment options, comfort, food, crew/service, and boarding process.
Copa Airlines
7.5
Good
1,574 reviews

Comfort

7.4

Crew

8.1

Entertainment

6.8

Food

6.8

Boarding

7.8

Overall

7.5

Reviews

1 / 20
6.0
Good

Maria,Dec 2025

MIA - PTY

The second flight to salta Argentina was terrible..the plain is old no entertainment no good food no nothing
Copa Airlines
7.5
Good
1,574 reviews
Copa Airlines
7.5
Good
1,574 reviews

Comfort

7.4

Crew

8.1

Entertainment

6.8

Food

6.8

Boarding

7.8

Overall

7.5

Reviews

1 / 20
6.0
Good

Maria,Dec 2025

MIA - PTY

The second flight to salta Argentina was terrible..the plain is old no entertainment no good food no nothing
Avianca
6.5
Okay
2,505 reviews
Copa Airlines
7.5
Good
1,574 reviews

Comfort

7.4

Crew

8.1

Entertainment

6.8

Food

6.8

Boarding

7.8

Overall

7.5

Reviews

1 / 20
6.0
Good

Maria,Dec 2025

MIA - PTY

The second flight to salta Argentina was terrible..the plain is old no entertainment no good food no nothing

Related info for your journey

Find useful and relevant information for your journey from San Juan to Guayaquil. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Guayaquil from San Juan?

    Most people fly into Guayaquil Jose Joaquin de Olmedo (GYE) if they book a flight to Guayaquil from San Juan. On average, Jose Joaquin de Olmedo has 0 inbound flights from San Juan per day from 2 airlines. Guayaquil Jose Joaquin de Olmedo is conveniently located just 2.5 mi from Guayaquil’s city center.

  • How long is the flight from San Juan to Guayaquil?

    For as low as $330, Spirit Airlines can have you in Guayaquil from San Juan in 11h 09m. The distance from San Juan to Guayaquil is about 1706 mi. Both multi-stop and nonstop flights can be found to your destination and back.

  • What are the cheapest airlines flying from San Juan to Guayaquil round-trip?

    Currently priced at $308, Avianca will fly you from San Juan to Guayaquil and back. In addition to Avianca, many other airlines offer competitively priced options for your trip. Check Cheapflights for deals on Copa Airlines for as low as $412. These flights start at 30% lower than the current average price 3 months from now.

  • Can I find deals for flights from San Juan to Guayaquil that include hotel bookings?

    Yes. In addition to deals on San Juan to Guayaquil flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from San Juan to Guayaquil?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from San Juan to Guayaquil.

  • Can I find deals for business class flights from San Juan to Guayaquil?

    Yes. Cheapflights offers flight deals from San Juan to Guayaquil by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from San Juan to Guayaquil?

    Currently, February is the cheapest month in which you can book a flight from San Juan to Guayaquil (average of $122). Flying from San Juan to Guayaquil in January is currently the most expensive (average of $450). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

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Complete your trip

Complete your trip to Guayaquil by adding a car rental and/or hotel reservation to your travel itinerary.
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Top 2 airlines flying from San Juan to Guayaquil

Discover the top 2 airlines that operate flights from San Juan to Guayaquil. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated March 22, 2026.
AirlineCheapestAverageFlexibilityOn-time
AviancaCheapest$308Average$478FlexibilityNo cancel feeOn-time71%
Copa AirlinesCheapest$412Average$500FlexibilityNo cancel feeOn-time70%

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