HomeSearch by dateVacation packagesHotelsFlight dealsCar rentalTravel tips & news
Guayaquil

$219+ Cheap flights from San Juan to Guayaquil (GYE)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 9/1. Fares are subject to change and may not be available on all flights or dates of travel.
SJU — GYE
Jun 6 — Jun 131
Sat 6/6
Sat 6/13
1 adult, Economy
We work with more than 300 partners to bring you better travel deals

Find cheap flights from San Juan to Guayaquil with Cheapflights

1. Tell us where you want to go

Enter your travel information like dates, passengers, trip type (one-way or round trip), and preferred cabin class then click “Find deals”

2. Select your favorite providers

We find the providers serving your travel needs. Choose up to four travel providers to compare side-by-side for flights, hotels, or car rentals.

3. Compare prices and book

Review each provider’s pricing and select the best option for you! Book through your favorite provider’s website for a seamless experience.

Cheap flight deals from San Juan to Guayaquil

Cheapest flights from San Juan to Guayaquil
Explore the most affordable flight options available from San Juan to Guayaquil. Find the lowest fares from popular airlines and budget airlines, with prices last updated on May 7, 2026.

This JetBlue deal was found by Cheapflights users on 5/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure JetBlue is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 6/275:28 am
SJU
-
GYE
1 stop9h 57m
JetBlue
Mon 7/612:25 pm
GYE
-
SJU
1 stop10h 34m
JetBlue
Deal found 5/5$495
This Avianca deal was found by Cheapflights users on 5/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Avianca is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 6/286:35 pm
SJU
-
GYE
1 stop15h 20m
Avianca
Sat 7/49:10 am
GYE
-
SJU
1 stop7h 00m
Avianca
Deal found 5/6$540
This United Airlines deal was found by Cheapflights users on 5/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 5/121:00 am
SJU
-
GYE
2 stops41h 29m
United Airlines
Sun 5/178:28 am
GYE
-
SJU
2 stops54h 14m
United Airlines
Deal found 5/6$547
This Avianca deal was found by Cheapflights users on 5/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Avianca is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 6/276:35 pm
SJU
-
GYE
1 stop5h 55m
Avianca
Sat 7/49:10 am
GYE
-
SJU
1 stop7h 00m
Avianca
Deal found 5/5$560
This United Airlines deal was found by Cheapflights users on 5/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 5/211:00 am
SJU
-
GYE
2 stops41h 29m
United Airlines
Sun 5/312:43 pm
GYE
-
SJU
2 stops32h 07m
United Airlines
Deal found 5/5$563
This United Airlines deal was found by Cheapflights users on 5/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 6/152:05 am
SJU
-
GYE
2 stops40h 24m
United Airlines
Wed 6/242:36 pm
GYE
-
SJU
2 stops37h 53m
United Airlines
Deal found 5/6$567
This Avianca deal was found by Cheapflights users on 5/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Avianca is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 7/16:35 pm
SJU
-
GYE
1 stop5h 55m
Avianca
Thu 7/910:05 am
GYE
-
SJU
1 stop6h 05m
Avianca
Deal found 5/6$570
This Copa Airlines deal was found by Cheapflights users on 5/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Copa Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 6/276:17 pm
SJU
-
GYE
1 stop6h 44m
Copa Airlines
Sat 7/44:23 am
GYE
-
SJU
1 stop7h 24m
Copa Airlines
Deal found 5/7$572
This United Airlines deal was found by Cheapflights users on 5/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 5/122:55 pm
SJU
-
GYE
2 stops27h 34m
United Airlines
Sun 5/172:43 pm
GYE
-
SJU
2 stops20h 21m
United Airlines
Deal found 5/6$582
This Copa Airlines deal was found by Cheapflights users on 5/7. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Copa Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 6/213:11 pm
SJU
-
GYE
1 stop6h 40m
Copa Airlines
Sun 6/2812:21 pm
GYE
-
SJU
1 stop9h 08m
Copa Airlines
Deal found 5/7$585
This United Airlines deal was found by Cheapflights users on 5/5. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 9/157:00 am
SJU
-
GYE
2 stops17h 37m
United Airlines
Sat 9/262:37 pm
GYE
-
SJU
2 stops44h 20m
United Airlines
Deal found 5/5$588

Find flight deals from San Juan to Guayaquil

Discover tips and strategies to find the most affordable flight options for your journey from San Juan (PR1) to Guayaquil (GYE). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated May 7, 2026.

Round-trip from

$495
(JetBlue)

One-way from

$219
(Kiwi.com)

Popular in

April

Cheapest in

November

Average price

$525
From San Juan to Guayaquil Jose Joaquin de Olmedo
Search Deals
One-way flight from San Juan to Guayaquil Jose Joaquin de Olmedo
Search Deals
Highest demand for flights based on searches. 13% potential increase in price ($72 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 2% potential price decrease ($14 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in May 2026
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from San Juan to Guayaquil that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated May 7, 2026.
Use the filters below to find and compare flights from San Juan to Guayaquil that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Thu 5/28

6:45 pm-11:36 pm

2 stops29h 51m

Guayaquil Jose Joaquin de Olmedo

Fri 6/5

8:27 am-12:04 pm

2 stops26h 37m

$547

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Tue 6/2

1:25 pm-11:36 pm

2 stops35h 11m

Guayaquil Jose Joaquin de Olmedo

Wed 6/10

8:27 am-5:29 am

2 stops20h 02m

$547

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Sat 6/27

6:35 pm-8:55 am

1 stop15h 20m

Guayaquil Jose Joaquin de Olmedo

Sat 7/4

10:05 am-5:10 pm

1 stop6h 05m

$560

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Tue 7/28

1:05 pm-11:30 pm

1 stop11h 25m

Guayaquil Jose Joaquin de Olmedo

Wed 8/5

10:05 am-5:10 pm

1 stop6h 05m

$560

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Thu 5/21

1:00 am-5:29 pm

2 stops41h 29m

Guayaquil Jose Joaquin de Olmedo

Sun 5/31

2:43 pm-11:50 pm

2 stops32h 07m

$563

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Sat 6/27

6:17 pm-12:01 am

1 stop6h 44m

Guayaquil Jose Joaquin de Olmedo

Sat 7/4

4:23 am-12:47 pm

1 stop7h 24m

$572
Quickest round-trip

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Sat 9/5

5:33 am-11:21 am

1 stop6h 48m

Guayaquil Jose Joaquin de Olmedo

Sat 9/5

2:37 pm-10:29 pm

1 stop6h 52m

$572
Cheapest one-way

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Tue 9/1

6:00 am-12:01 am

2 stops19h 01m

$219
Quickest one-way

San JuanGuayaquil

SJU - GYE

SJUGYE

San Juan Luis Munoz Marin Intl

Tue 9/1

6:35 pm-8:55 am

1 stop15h 20m

$262

Flights are sorted by cheapest round-trip flights first.

Deals found on 5/5

Sorted by cheapest first

Best time to book a flight from San Juan to Guayaquil

Have a flexible travel schedule? Discover the best time to fly to Guayaquil from San Juan with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from San Juan to Guayaquil

What is the cheapest month to book a flight from San Juan to Guayaquil?

Currently, April is the cheapest month in which you can book a flight from San Juan to Guayaquil (average of $110). Flying from San Juan to Guayaquil in January is currently the most expensive (average of $450). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

How much does it cost to fly round-trip from San Juan to Guayaquil?

Reviews of airlines servicing Guayaquil

Get insights into the airlines that provide service to Guayaquil. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Guayaquil. Reviews last updated May 7, 2026.
Get a feel of what it's like to fly with Copa Airlines and Avianca from San Juan to Guayaquil by reading reviews from past customers. Users have also rated airlines in terms of entertainment options, comfort, food, crew/service, and boarding process.
Copa Airlines
7.5
Good
1,582 reviews

Overall

7.5

Food

6.8

Boarding

7.8

Crew

8.1

Entertainment

6.8

Comfort

7.4

Reviews

1 / 20
6.0
Good

Maria,Dec 2025

MIA - PTY

The second flight to salta Argentina was terrible..the plain is old no entertainment no good food no nothing
Copa Airlines
7.5
Good
1,582 reviews
Copa Airlines
7.5
Good
1,582 reviews

Overall

7.5

Food

6.8

Boarding

7.8

Crew

8.1

Entertainment

6.8

Comfort

7.4

Reviews

1 / 20
6.0
Good

Maria,Dec 2025

MIA - PTY

The second flight to salta Argentina was terrible..the plain is old no entertainment no good food no nothing
Avianca
6.5
Okay
2,522 reviews
Copa Airlines
7.5
Good
1,582 reviews

Overall

7.5

Food

6.8

Boarding

7.8

Crew

8.1

Entertainment

6.8

Comfort

7.4

Reviews

1 / 20
6.0
Good

Maria,Dec 2025

MIA - PTY

The second flight to salta Argentina was terrible..the plain is old no entertainment no good food no nothing

Related info for your journey

Find useful and relevant information for your journey from San Juan to Guayaquil. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Guayaquil from San Juan?

    Most people fly into Guayaquil Jose Joaquin de Olmedo (GYE) if they book a flight to Guayaquil from San Juan. On average, Jose Joaquin de Olmedo has 0 inbound flights from San Juan per day from 2 airlines. Guayaquil Jose Joaquin de Olmedo is conveniently located just 2.5 mi from Guayaquil’s city center.

  • How long is the flight from San Juan to Guayaquil?

    For as low as $560, United Airlines can have you in Guayaquil from San Juan in 15h 20m. The distance from San Juan to Guayaquil is about 1706 mi. Both multi-stop and nonstop flights can be found to your destination and back.

  • What are the cheapest airlines flying from San Juan to Guayaquil round-trip?

    Currently priced at $324, Avianca will fly you from San Juan to Guayaquil and back. In addition to Avianca, many other airlines offer competitively priced options for your trip. Check Cheapflights for deals on Copa Airlines for as low as $422. These flights start at 29% lower than the current average price 3 months from now.

  • Can I find deals for flights from San Juan to Guayaquil that include hotel bookings?

    Yes. In addition to deals on San Juan to Guayaquil flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from San Juan to Guayaquil?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from San Juan to Guayaquil.

  • Can I find deals for business class flights from San Juan to Guayaquil?

    Yes. Cheapflights offers flight deals from San Juan to Guayaquil by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from San Juan to Guayaquil?

    Currently, April is the cheapest month in which you can book a flight from San Juan to Guayaquil (average of $110). Flying from San Juan to Guayaquil in January is currently the most expensive (average of $450). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Complete your trip

Complete your trip to Guayaquil by adding a car rental and/or hotel reservation to your travel itinerary.
Guayaquil car rentals
Cuenca Airport car rentals
Quito car rentals
Cuenca car rentals
Manta car rentals

Top 2 airlines flying from San Juan to Guayaquil

Discover the top 2 airlines that operate flights from San Juan to Guayaquil. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated May 7, 2026.
AirlineCheapestAverageFlexibilityOn-time
AviancaCheapest$324Average$539FlexibilityNo cancel feeOn-time71%
Copa AirlinesCheapest$422Average$586FlexibilityNo cancel feeOn-time70%

100% Free

Cheapflights is completely free to use, so you can start saving the moment you arrive.

Book with Flexibility

Our users can plan ahead with confidence and find flights with no change fees

Travel Smart

Millions of people come to us for their flight needs every year. We help make travel planning easy by providing useful insights and data-driven graphs that can inform your decisions.