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San Juan

$266+ Cheap flights from Missoula (MSO) to San Juan

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 3/6. Fares are subject to change and may not be available on all flights or dates of travel.
MSO — SJU
Jan 29 — Feb 51
Thu 1/29
Thu 2/5
1 adult, Economy
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Cheap flight deals from Missoula to San Juan

Best flights from Missoula to San Juan
Discover carefully curated flight deals from Missoula to San Juan that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated December 30, 2025.

This United Airlines deal was found by Cheapflights users on 12/28. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 3/16:15 amMSO - SJU
1 stop9h 10mUnited Airlines
Wed 3/117:05 amSJU - MSO
2 stops16h 52mUnited Airlines
Deal found 12/28$495
This American Airlines deal was found by Cheapflights users on 12/28. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure American Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 3/61:20 pmMSO - SJU
1 stop13h 04mAmerican Airlines
Wed 3/116:33 amSJU - MSO
1 stop17h 23mAmerican Airlines
Deal found 12/28$531
This Delta deal was found by Cheapflights users on 12/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Delta is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 1/217:55 amMSO - SJU
2 stops12h 50mDelta
Mon 2/23:55 pmSJU - MSO
2 stops11h 33mDelta
Deal found 12/29$531
This Delta deal was found by Cheapflights users on 12/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Delta is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 1/206:18 pmMSO - SJU
2 stops19h 32mDelta
Mon 2/23:55 pmSJU - MSO
2 stops11h 33mDelta
Deal found 12/29$531
This United Airlines deal was found by Cheapflights users on 12/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 1/206:00 amMSO - SJU
1 stop9h 25mUnited Airlines
Mon 2/22:05 amSJU - MSO
2 stops17h 00mUnited Airlines
Deal found 12/29$531
This Delta deal was found by Cheapflights users on 12/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Delta is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 1/185:00 amMSO - SJU
2 stops15h 45mDelta
Thu 2/53:20 pmSJU - MSO
2 stops12h 08mDelta
Deal found 12/29$603
This United Airlines deal was found by Cheapflights users on 12/27. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 1/266:00 amMSO - SJU
2 stops15h 36mUnited Airlines
Tue 1/272:05 amSJU - MSO
2 stops17h 00mUnited Airlines
Deal found 12/27$621
This Delta deal was found by Cheapflights users on 12/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Delta is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 1/236:18 pmMSO - SJU
2 stops19h 32mDelta
Fri 2/63:20 pmSJU - MSO
2 stops12h 08mDelta
Deal found 12/29$608
This Delta deal was found by Cheapflights users on 12/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Delta is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 1/185:00 amMSO - SJU
2 stops15h 45mDelta
Wed 2/47:00 amSJU - MSO
2 stops16h 14mDelta
Deal found 12/29$616

Find flight deals from Missoula to San Juan

Discover tips and strategies to find the most affordable flight options for your journey from Missoula (MSO) to San Juan (PR1). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated December 30, 2025.

Round-trip from

$495
(United Airlines)

One-way from

$266
(American Airlines)

Popular in

December

Cheapest in

October

Average price

$1,420
From Missoula Johnson-Bell Field to San Juan
Search Deals
One-way flight from Missoula Johnson-Bell Field to San Juan
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Highest demand for flights based on searches. 23% potential increase in price ($254 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 7% potential price decrease ($59 potential savings vs. average RT price).
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Average for round-trip flights in December 2025
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Cheapflights Fare Finder

 
Customize your flight search to find flights from Missoula to San Juan that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated December 30, 2025.
Use the filters below to find and compare flights from Missoula to San Juan that are best for you.

Fly from

Missoula

Fly to

San Juan

Route

Depart

Return

Price

MissoulaSan Juan

MSO - SJU

MSOSJU

Missoula Johnson-Bell Field

Sun 3/1

6:15 am-6:25 pm

1 stop9h 10m

San Juan Luis Munoz Marin Intl

Wed 3/11

7:05 am-9:57 pm

2 stops16h 52m

$495

MissoulaSan Juan

MSO - SJU

MSOSJU

Missoula Johnson-Bell Field

Fri 3/6

1:20 pm-5:24 am

1 stop13h 04m

San Juan Luis Munoz Marin Intl

Wed 3/11

6:33 am-9:56 pm

1 stop17h 23m

$531

MissoulaSan Juan

MSO - SJU

MSOSJU

Missoula Johnson-Bell Field

Wed 1/21

7:55 am-11:45 pm

2 stops12h 50m

San Juan Luis Munoz Marin Intl

Mon 2/2

3:55 pm-12:28 am

2 stops11h 33m

$531

MissoulaSan Juan

MSO - SJU

MSOSJU

Missoula Johnson-Bell Field

Tue 1/20

6:18 pm-4:50 pm

2 stops19h 32m

San Juan Luis Munoz Marin Intl

Mon 2/2

3:55 pm-12:28 am

2 stops11h 33m

$531

MissoulaSan Juan

MSO - SJU

MSOSJU

Missoula Johnson-Bell Field

Tue 1/20

6:00 am-6:25 pm

1 stop9h 25m

San Juan Luis Munoz Marin Intl

Mon 2/2

2:05 am-4:05 pm

2 stops17h 00m

$531

MissoulaSan Juan

MSO - SJU

MSOSJU

Missoula Johnson-Bell Field

Sun 1/18

5:00 am-11:45 pm

2 stops15h 45m

San Juan Luis Munoz Marin Intl

Thu 2/5

3:20 pm-12:28 am

2 stops12h 08m

$603

MissoulaSan Juan

MSO - SJU

MSOSJU

Missoula Johnson-Bell Field

Fri 1/23

6:18 pm-4:50 pm

2 stops19h 32m

San Juan Luis Munoz Marin Intl

Fri 2/6

3:20 pm-12:28 am

2 stops12h 08m

$608

MissoulaSan Juan

MSO - SJU

MSOSJU

Missoula Johnson-Bell Field

Sun 1/18

5:00 am-11:45 pm

2 stops15h 45m

San Juan Luis Munoz Marin Intl

Wed 2/4

7:00 am-8:14 pm

2 stops16h 14m

$616

MissoulaSan Juan

MSO - SJU

MSOSJU

Missoula Johnson-Bell Field

Mon 1/26

6:00 am-12:36 am

2 stops15h 36m

San Juan Luis Munoz Marin Intl

Tue 1/27

2:05 am-4:05 pm

2 stops17h 00m

$621

MissoulaSan Juan

MSO - SJU

MSOSJU

Missoula Johnson-Bell Field

Fri 3/6

1:20 pm-11:56 am

2 stops19h 36m

$266

Flights are sorted by cheapest round-trip flights first.

Deals found on 12/28

Showing 1-10 of 11 results
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Best time to book a flight from Missoula to San Juan

Have a flexible travel schedule? Discover the best time to fly to San Juan from Missoula with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Missoula to San Juan
No data available for this route at this time. Please check back soon.

Reviews of airlines servicing San Juan

Get insights into the airlines that provide service to San Juan. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to San Juan. Reviews last updated December 30, 2025.
Read through reviews of airlines operating flights from Missoula to San Juan, such as United Airlines. Reviews also offer insight into each airline's entertainment options, comfort, food, crew/service, and boarding process.
United Airlines
7.4
Good
9,122 reviews

Crew

8.1

Overall

7.4

Food

6.6

Boarding

7.7

Comfort

7.3

Entertainment

7.1

Reviews

1 / 20
10.0
Excellent

Michelle,Dec 2025

DEN - MKE

I liked that the plane waited 5 minutes for a family whose incoming plane was late. This was the last flight of the day to MKE. Flight attendants actually checked in throughout the flight. Although, not really friendly. Happy to see screens on seat backs again. This is my first time not flying first class in over 10 years. It was economy plus.
United Airlines
7.4
Good
9,122 reviews
United Airlines
7.4
Good
9,122 reviews

Crew

8.1

Overall

7.4

Food

6.6

Boarding

7.7

Comfort

7.3

Entertainment

7.1

Reviews

1 / 20
10.0
Excellent

Michelle,Dec 2025

DEN - MKE

I liked that the plane waited 5 minutes for a family whose incoming plane was late. This was the last flight of the day to MKE. Flight attendants actually checked in throughout the flight. Although, not really friendly. Happy to see screens on seat backs again. This is my first time not flying first class in over 10 years. It was economy plus.

Related info for your journey

Find useful and relevant information for your journey from Missoula to San Juan. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly from for flights from Missoula to San Juan?

    Missoula Johnson-Bell Field (MSO) is the airport you will fly out of if you book a flight from Missoula to San Juan. You should not have trouble finding flights to San Juan from Johnson-Bell Field; the airport handles an average of 0 outbound flights to San Juan per day. You should also have plenty of airline options to choose from since 1 airline has flights from the Missoula airport to San Juan. It is only a 5.5 mi journey to Johnson-Bell Field (MSO) from Missoula’s city center.

  • How long is the flight from Missoula to San Juan?

    For as low as $495, United Airlines can have you in San Juan from Missoula in 12h 37m. There are 3342 mi between Missoula and San Juan. Both multi-stop and nonstop flights can be found to your destination and back.

  • What is the cheapest airline to fly from Missoula to San Juan round-trip?

    According to our current data, United Airlines ($442), offers the cheapest pricing from Missoula to San Juan. Users have found that United Airlines is 46% cheaper than the other options available to this destination.

  • Can I find deals for flights from Missoula to San Juan that include hotel bookings?

    Yes. In addition to deals on Missoula to San Juan flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Missoula to San Juan?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Missoula to San Juan.

  • Can I find deals for business class flights from Missoula to San Juan?

    Yes. Cheapflights offers flight deals from Missoula to San Juan by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

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Alternative routes for Missoula to San Juan

See prices for flight routes from nearby airports that may be better suited for you.
Bozeman to Luis Munoz Marin Intl flights
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Top airline flying from Missoula to San Juan

Discover the top airline that operate flights from Missoula to San Juan. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated December 30, 2025.
AirlineCheapestAverageFlexibilityOn-time
United AirlinesCheapest$531Average$805FlexibilityNo cancel feeOn-time69%

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