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$645+ Cheap flights from Juneau to Missoula (JNU - MSO)

This is the cheapest round-trip flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 4/15. Fares are subject to change and may not be available on all flights or dates of travel.
JNU — MSO
Nov 28 — Dec 51
Fri 11/28
Fri 12/5
1 adult, Economy
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Cheap flight deals from Juneau to Missoula

Discover tips and strategies to find the most affordable flight options for your journey from Juneau (JNU) to Missoula (MSO). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated October 29, 2025.

Most accurate provider

eDreams
3 stars

Most trusted provider

eDreams
3 stars

Round-trip from

$645
(Alaska Airlines)
Provider with most accurate pricing for Juneau Intl-Missoula Johnson-Bell Field flight deals.
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Provider most trusted by Cheapflights users for Juneau Intl-Missoula Johnson-Bell Field flights.
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From Juneau Intl to Missoula Johnson-Bell Field
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Find flight deals from Juneau to Missoula

Best flights from Juneau to Missoula
Discover carefully curated flight deals from Juneau to Missoula that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated October 29, 2025.

This Alaska Airlines deal was found by Cheapflights users on 10/26. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 4/159:30 amJNU - MSO
3 stops30h 23mAlaska Airlines
Sun 4/192:35 pmMSO - JNU
3 stops31h 17mAlaska Airlines
Deal found 10/26$645

Cheapflights Fare Finder

 
Customize your flight search to find flights from Juneau to Missoula that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated October 29, 2025.
Use the filters below to find and compare flights from Juneau to Missoula that are best for you.

Fly from

Juneau

Fly to

Missoula

Route

Depart

Return

Price

JuneauMissoula

JNU - MSO

JNUMSO

Juneau Intl

Wed 4/15

9:30 am-5:53 pm

3 stops30h 23m

Missoula Johnson-Bell Field

Sun 4/19

2:35 pm-7:52 pm

3 stops31h 17m

$645

Flights are sorted by cheapest round-trip flights first.

Deals found on 10/26

Compare providers for flights from Juneau to Missoula

Provider information is updated monthly. Please note that these providers often have deals for this flight, but the availability may vary on a day-by-day basis on Cheapflights.
Use the table below to compare price accuracy, trust ratings, and cancellation policies for each provider offering flight deals from Juneau to Missoula in October.
ProviderPrice AccuracyTrust Score*
ExpediaPrice Accuracy2 starsTrust Score*3 stars
eDreamsPrice Accuracy3 starsTrust Score*3 stars

*The Trust Score is based on feedback from users after their booking experience. It measures overall satisfaction, helping us identify issues like hidden fees, problems during the ticketing process, and the quality of customer service. This score is our best indicator of the provider's quality and reliability.

  • Most accurate provider: When it comes to deals on Juneau-Missoula flights, users find the pricing of eDreams to be most consistent on Cheapflights vs. eDreams Users can find the same prices on Juneau-Missoula flight deals on Cheapflights vs. eDreams >95% of the time. Price accuracy is based on data collected from Juneau-Missoula flight searches over the past month and is updated monthly.
  • Most trusted provider: When it comes to deals on Juneau-Missoula flights, Cheapflights users trust eDreams the most. eDreams has received a user feedback score of 3 out of 3 stars (3 being the best), meaning they have been trusted the most by Cheapflights users looking for Juneau-Missoula flight deals. Provider user feedback score is based on Cheapflights searches over the past month and is updated monthly.

Best time to book a flight from Juneau to Missoula

Have a flexible travel schedule? Discover the best time to fly to Missoula from Juneau with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Related info for your journey

Find useful and relevant information for your journey from Juneau to Missoula. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How long is the flight from Juneau to Missoula?

    A quick flight from Juneau to Missoula can take about 30h 23m. Alaska Airlines provides one of the quickest options available for as low as $645. There are 1158 mi between Juneau and Missoula.

  • Can I find deals for flights from Juneau to Missoula that include hotel bookings?

    Yes. In addition to deals on Juneau to Missoula flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Juneau to Missoula?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Juneau to Missoula.

  • Can I find deals for business class flights from Juneau to Missoula?

    Yes. Cheapflights offers flight deals from Juneau to Missoula by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

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