$400+ Cheap flights from Juneau to Missoula (JNU - MSO)
This is the cheapest round-trip flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 2/24. Fares are subject to change and may not be available on all flights or dates of travel.
JNU — MSO
Feb 27 — Mar 61
1 adult, Economy
We work with more than 300 partners to bring you better travel deals
Find cheap flights from Juneau to Missoula with Cheapflights
1. Tell us where you want to go
Enter your travel information like dates, passengers, trip type (one-way or round trip), and preferred cabin class then click “Find deals”2. Select your favorite providers
We find the providers serving your travel needs. Choose up to four travel providers to compare side-by-side for flights, hotels, or car rentals.3. Compare prices and book
Review each provider’s pricing and select the best option for you! Book through your favorite provider’s website for a seamless experience.Cheap flight deals from Juneau to Missoula
Cheapest flights from Juneau to MissoulaExplore the most affordable flight options available from Juneau to Missoula. Find the lowest fares from popular airlines and budget airlines, with prices last updated on January 28, 2026.
Explore the most affordable flight options available from Juneau to Missoula. Find the lowest fares from popular airlines and budget airlines, with prices last updated on January 28, 2026.
This Alaska Airlines deal was found by Cheapflights users on 1/28. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 2/247:26 am
JNU
- MSO
2 stops14h 33m
Alaska Airlines
Wed 3/46:23 am
MSO
- JNU
2 stops26h 20m
Alaska Airlines
Deal found 1/28![Alaska Airlines logo]()
$400
This Alaska Airlines deal was found by Cheapflights users on 1/25. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 2/37:20 am
JNU
- MSO
2 stops14h 35m
Alaska Airlines
Sat 2/76:23 am
MSO
- JNU
2 stops17h 11m
Alaska Airlines
Deal found 1/25![Alaska Airlines logo]()
$796
Find flight deals from Juneau to Missoula
Discover tips and strategies to find the most affordable flight options for your journey from Juneau (JNU) to Missoula (MSO). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated January 28, 2026.
Most accurate provider | Expedia 1 star |
|---|---|
Most trusted provider | Expedia 3 stars |
Round-trip from | $400 (Alaska Airlines) |
Cheapflights Fare Finder
Customize your flight search to find flights from Juneau to Missoula that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated January 28, 2026.
Use the filters below to find and compare flights from Juneau to Missoula that are best for you.
Fly from
Juneau
Fly to
Missoula
Route
Depart
Return
Price
JuneauMissoula
JNU - MSO
JNUMSO
Juneau Intl
Tue 2/24
7:26 am-11:59 pm
2 stops14h 33m
Missoula Johnson-Bell Field
Wed 3/4
6:23 am-6:43 am
2 stops26h 20m
$400
- Most accurate provider: When it comes to deals on Juneau-Missoula flights, users find the pricing of Expedia to be most consistent on Cheapflights vs. Expedia Users can find the same prices on Juneau-Missoula flight deals on Cheapflights vs. Expedia <90% of the time. Price accuracy is based on data collected from Juneau-Missoula flight searches over the past month and is updated monthly.
- Most trusted provider: When it comes to deals on Juneau-Missoula flights, Cheapflights users trust Expedia the most. Expedia has received a user feedback score of 3 out of 3 stars (3 being the best), meaning they have been trusted the most by Cheapflights users looking for Juneau-Missoula flight deals. Provider user feedback score is based on Cheapflights searches over the past month and is updated monthly.
Best time to book a flight from Juneau to Missoula
Have a flexible travel schedule? Discover the best time to fly to Missoula from Juneau with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.