HomeSearch by dateVacation packagesHotelsFlight dealsCar rentalTravel tips & news
Juneau

$1,185+ Cheap flights from Missoula to Juneau (MSO - JNU)

This is the cheapest round-trip flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 7/1. Fares are subject to change and may not be available on all flights or dates of travel.
MSO — JNU
Jul 8 — Jul 151
Tue 7/8
Tue 7/15
1 adult, Economy
We work with more than 300 partners to bring you better travel deals

Find cheap flights from Missoula to Juneau with Cheapflights

1. Tell us where you want to go

Enter your travel information like dates, passengers, trip type (one-way or round trip), and preferred cabin class then click “Find deals”

2. Select your favorite providers

We find the providers serving your travel needs. Choose up to four travel providers to compare side-by-side for flights, hotels, or car rentals.

3. Compare prices and book

Review each provider’s pricing and select the best option for you! Book through your favorite provider’s website for a seamless experience.

Find flight deals from Missoula to Juneau

Cheapest flights from Missoula to Juneau
Explore the most affordable flight options available from Missoula to Juneau. Find the lowest fares from popular airlines and budget airlines, with prices last updated on July 3, 2025.

This Alaska Airlines deal was found by Cheapflights users on 7/1. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 7/16:36 pmMSO - JNU
1 stop15h 53mAlaska Airlines
Mon 7/71:55 amJNU - MSO
1 stop11h 22mAlaska Airlines
Deal found 7/1$1,185

Best time to book a flight from Missoula to Juneau

Have a flexible travel schedule? Discover the best time to fly to Juneau from Missoula with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Related info for your journey

Find useful and relevant information for your journey from Missoula to Juneau. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • Can I find deals for flights from Missoula to Juneau that include hotel bookings?

    Yes. In addition to deals on Missoula to Juneau flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Missoula to Juneau?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Missoula to Juneau.

  • Can I find deals for business class flights from Missoula to Juneau?

    Yes. Cheapflights offers flight deals from Missoula to Juneau by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Missoula to Juneau?

    Currently, September is the cheapest month in which you can book a flight from Missoula to Juneau (average of $399). Flying from Missoula to Juneau in July is currently the most expensive (average of $690). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Top airline flying from Missoula to Juneau

Discover the top airline that operate flights from Missoula to Juneau. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated July 3, 2025.
AirlineCheapestAverageFlexibilityOn-time
Alaska AirlinesCheapest$505Average$680FlexibilityNo cancel feeOn-time75%

100% Free

Cheapflights is completely free to use, so you can start saving the moment you arrive.

Book with Flexibility

Our users can plan ahead with confidence and find flights with no change fees

Travel Smart

Millions of people come to us for their flight needs every year. We help make travel planning easy by providing useful insights and data-driven graphs that can inform your decisions.