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Kota Kinabalu

$49+ Cheap flights from Manila (MNL) to Kota Kinabalu (BKI)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 9/5. Fares are subject to change and may not be available on all flights or dates of travel.
MNL — BKI
Aug 21 — Aug 281
Thu 8/21
Thu 8/28
1 adult, Economy
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Cheapflights Tip: The best prices from Manila Ninoy Aquino Intl to Kota Kinabalu are usually found in July or June, booked 71 days in advance, depart on a Friday or Wednesday and return on a Monday

Cheap flight deals from Manila to Kota Kinabalu

Discover tips and strategies to find the most affordable flight options for your journey from Manila (MNL) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated August 16, 2025.

Round-trip from

$102
(Trip.com)

One-way from

$49
(AirAsia)

Popular in

January

Cheapest in

July

Average price

$94

Good round-trip deal

$87 or less

Good one-way deal

$41 or less
From Manila Ninoy Aquino Intl to Kota Kinabalu
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One-way flight from Manila Ninoy Aquino Intl to Kota Kinabalu
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Highest demand for flights based on searches. 17% potential increase in price ($24 potential increase over avg. RT price).
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Cheapest flight prices on average. 2% potential price decrease ($3 potential savings vs. average RT price).
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Average for round-trip flights in August 2025
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Price to beat on a round-trip flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
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Price to beat on a one-way flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
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Find flight deals from Manila to Kota Kinabalu

Cheapest flights from Manila to Kota Kinabalu
Explore the most affordable flight options available from Manila to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on August 16, 2025.

This AirAsia deal was found by Cheapflights users on 8/14. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure AirAsia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 9/411:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sat 9/61:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/14$102
This AirAsia deal was found by Cheapflights users on 8/15. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure AirAsia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/811:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sun 10/121:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/15$106
This AirAsia deal was found by Cheapflights users on 8/16. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure AirAsia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 9/2111:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Tue 9/231:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/16$114
This AirAsia deal was found by Cheapflights users on 8/13. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure AirAsia is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 9/2811:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sat 10/41:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/13$148
This Trip.com deal was found by Cheapflights users on 8/15. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Trip.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 9/296:55 amMNL - BKI
1 stop12h 30mMultiple Airlines
Sun 10/51:45 amBKI - MNL
Nonstop2h 10mMultiple Airlines
Deal found 8/15$165
This Trip.com deal was found by Cheapflights users on 8/15. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Trip.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 9/2311:10 pmMNL - BKI
Nonstop2h 10mMultiple Airlines
Tue 9/309:05 pmBKI - MNL
1 stop17h 05mMultiple Airlines
Deal found 8/15$169
This CheapOair deal was found by Cheapflights users on 8/14. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure CheapOair is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/86:55 amMNL - BKI
1 stop28h 20mScoot
Mon 10/138:25 pmBKI - MNL
1 stop22h 10mScoot
Deal found 8/14$173

Cheapflights Fare Finder

 
Customize your flight search to find flights from Manila to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated August 16, 2025.
Use the filters below to find and compare flights from Manila to Kota Kinabalu that are best for you.

Fly from

Manila

Fly to

Kota Kinabalu

Route

Depart

Return

Price

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Tue 9/23

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Mon 9/29

1:45 am-3:55 am

Nonstop2h 10m

$102

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Thu 9/4

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Sat 9/6

1:45 am-3:55 am

Nonstop2h 10m

$102

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 10/8

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Sun 10/12

1:45 am-3:55 am

Nonstop2h 10m

$106

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 9/21

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Tue 9/23

1:45 am-3:55 am

Nonstop2h 10m

$114

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 9/28

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Sat 10/4

1:45 am-3:55 am

Nonstop2h 10m

$148

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 9/29

6:55 am-7:25 pm

1 stop12h 30m

Kota Kinabalu

Sun 10/5

1:45 am-3:55 am

Nonstop2h 10m

$165

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 10/8

6:55 am-11:15 am

1 stop28h 20m

Kota Kinabalu

Mon 10/13

8:25 pm-6:35 pm

1 stop22h 10m

$165

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Tue 9/23

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Tue 9/30

9:05 pm-2:10 pm

1 stop17h 05m

$169

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 9/5

11:10 pm-1:20 am

Nonstop2h 10m

$49

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 9/7

11:10 pm-1:20 am

Nonstop2h 10m

$49

Flights are sorted by cheapest round-trip flights first.

Deals found on 8/14

Showing 1-10 of 20 results
1
2

Best time to book a flight from Manila to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Manila with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Manila to Kota Kinabalu

How far ahead should I book a flight from Manila to Kota Kinabalu?

Use this chart to determine the optimal time to book a round-trip flight from Manila to Kota Kinabalu. Price data was last updated on August 8, 2025.

The best time to book flights from Manila to Kota Kinabalu is 71 days before your desired departure date. The cost of your flight will likely increase significantly if you book two weeks in advance of your flight.

What is the cheapest time of day to fly from MNL to BKI?

Find hourly flight availability from Manila to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated August 16, 2025.

It’s optimal to fly from Manila to Kota Kinabalu at noon. By choosing this option you can save up to 19% on the cost of your flight, compared to a flight in the morning.

Reviews of airlines servicing Kota Kinabalu

Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated August 16, 2025.
See what other customers who have flown with Philippines AirAsia from Manila to Kota Kinabalu have to say. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
Philippines AirAsia
6.6
Okay
113 reviews

Boarding

6.6

Food

6.2

Entertainment

5.6

Comfort

6.5

Crew

7.4

Overall

6.6

Reviews

1 / 4
6.0
Good

Edward,Feb 2024

DVO - MNL

Ontime. But we hated that we paid to upgrade our weight of checked bags and carryon but your staff wanted to recheck and re weight it 2 times at 2 different points
Philippines AirAsia
6.6
Okay
113 reviews
Philippines AirAsia
6.6
Okay
113 reviews

Boarding

6.6

Food

6.2

Entertainment

5.6

Comfort

6.5

Crew

7.4

Overall

6.6

Reviews

1 / 4
6.0
Good

Edward,Feb 2024

DVO - MNL

Ontime. But we hated that we paid to upgrade our weight of checked bags and carryon but your staff wanted to recheck and re weight it 2 times at 2 different points

Related info for your journey

Find useful and relevant information for your journey from Manila to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How popular is this Manila to Kota Kinabalu flight route?

    This flight path from Manila Ninoy Aquino Intl to Kota Kinabalu was viewed by 20 users in the past month. Keep an eye out for changes in search interest prior to high and low season.

  • What is the cheapest airline to fly from Manila to Kota Kinabalu round-trip?

    Our cheapest airline available from Manila to Kota Kinabalu is Philippines AirAsia. Our recent data shows that you can find tickets from as low as $82 on this airline. Philippines AirAsia is currently priced 26% below the average price you’ll pay for this route.

  • What are the cheapest flights from Manila to Kota Kinabalu?

    On average you can expect to pay $84 for a flight from Manila to Kota Kinabalu. The cheapest flight overall is $37 while the most popular route, (Manila Ninoy Aquino Intl - Kota Kinabalu) is currently priced at $190.

  • Can I find deals for flights from Manila to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Manila to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Manila to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Manila to Kota Kinabalu.

  • Can I find deals for business class flights from Manila to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Manila to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

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Complete your trip

Complete your trip to Kota Kinabalu by adding a car rental and/or hotel reservation to your travel itinerary.
Kota Kinabalu car rentals
Kota Kinabalu Airport car rentals

Top airline flying from Manila to Kota Kinabalu

Discover the top airline that operate flights from Manila to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated August 16, 2025.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest$82Average$106FlexibilityNo cancel feeOn-time53%

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