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Kota Kinabalu

$46+ Cheap flights from Manila (MNL) to Kota Kinabalu (BKI)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 6/25. Fares are subject to change and may not be available on all flights or dates of travel.
MNL — BKI
May 5 — May 121
Mon 5/5
Mon 5/12
1 adult, Economy
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Cheapflights Tip: The best prices from Manila Ninoy Aquino Intl to Kota Kinabalu are usually found in November or July, booked 71 days in advance, depart on a Monday or Tuesday and return on a Wednesday

Cheap flight deals from Manila to Kota Kinabalu

Discover tips and strategies to find the most affordable flight options for your journey from Manila (MNL) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated April 30, 2025.

Most accurate provider

CheapOair
3 stars

Most trusted provider

CheapOair
3 stars

Round-trip from

$89
(OneTravel)

One-way from

$46
(CheapOair)

Popular in

January

Cheapest in

November

Average price

$114

Good round-trip deal

$95 or less

Good one-way deal

$41 or less
Provider with most accurate pricing for Manila Ninoy Aquino Intl-Kota Kinabalu flight deals.
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Provider most trusted by Cheapflights users for Manila Ninoy Aquino Intl-Kota Kinabalu flights.
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From Manila Ninoy Aquino Intl to Kota Kinabalu
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One-way flight from Manila Ninoy Aquino Intl to Kota Kinabalu
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Highest demand for flights based on searches. 10% potential increase in price ($14 potential increase over avg. RT price).
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Cheapest flight prices on average. 1% potential price decrease ($2 potential savings vs. average RT price).
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Average for round-trip flights in April 2025
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Price to beat on a round-trip flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
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Price to beat on a one-way flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
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Find flight deals from Manila to Kota Kinabalu

Cheapest flights from Manila to Kota Kinabalu
Explore the most affordable flight options available from Manila to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on April 30, 2025.

This OneTravel deal was found by Cheapflights users on 4/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure OneTravel is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 6/2511:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sat 6/281:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 4/29$89
This Trip.com deal was found by Cheapflights users on 4/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Trip.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 6/197:35 pmMNL - BKI
1 stop25h 25mMultiple Airlines
Tue 6/241:45 amBKI - MNL
Nonstop2h 10mMultiple Airlines
Deal found 4/29$141
This CheapOair deal was found by Cheapflights users on 4/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure CheapOair is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/86:55 amMNL - BKI
1 stop12h 30mScoot
Mon 10/138:25 pmBKI - MNL
1 stop22h 10mScoot
Deal found 4/29$160
This Trip.com deal was found by Cheapflights users on 4/28. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Trip.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 10/309:40 pmMNL - BKI
1 stop10h 30mRoyal Brunei Airlines
Sun 11/28:30 amBKI - MNL
1 stop5h 35mRoyal Brunei Airlines
Deal found 4/28$264
This China Southern deal was found by Cheapflights users on 4/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure China Southern is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 6/225:45 pmMNL - BKI
1 stop24h 35mChina Southern
Mon 6/307:20 pmBKI - MNL
1 stop27h 55mChina Southern
Deal found 4/29$325
This Malaysia Airlines deal was found by Cheapflights users on 4/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Malaysia Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 7/86:50 amMNL - BKI
1 stop17h 50mMalaysia Airlines
Wed 7/235:20 amBKI - MNL
1 stop8h 45mMalaysia Airlines
Deal found 4/29$328
This Jeju Air deal was found by Cheapflights users on 4/28. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Jeju Air is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 6/2511:20 pmMNL - BKI
1 stop24h 10mJeju Air
Sat 6/2812:30 amBKI - MNL
1 stop21h 50mJeju Air
Deal found 4/28$362
This Philippine Airlines deal was found by Cheapflights users on 4/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Philippine Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 6/2611:25 amMNL - BKI
1 stop13h 15mPhilippine Airlines
Fri 6/275:20 amBKI - MNL
1 stop11h 00mPhilippine Airlines
Deal found 4/29$402
This OneTravel deal was found by Cheapflights users on 4/29. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure OneTravel is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 6/183:55 amMNL - BKI
1 stop20h 35mChina Eastern
Tue 6/241:30 amBKI - MNL
1 stop23h 50mChina Eastern
Deal found 4/29$644

Cheapflights Fare Finder

Customize your flight search to find flights from Manila to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated April 30, 2025.
Use the filters below to find and compare flights from Manila to Kota Kinabalu that are best for you.

Fly from

Manila

Fly to

Kota Kinabalu

Route

Depart

Return

Price

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 6/25

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Sat 6/28

1:45 am-3:55 am

Nonstop2h 10m

$89

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Thu 6/19

7:35 pm-9:00 pm

1 stop25h 25m

Kota Kinabalu

Tue 6/24

1:45 am-3:55 am

Nonstop2h 10m

$141

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 10/8

6:55 am-7:25 pm

1 stop12h 30m

Kota Kinabalu

Mon 10/13

8:25 pm-6:35 pm

1 stop22h 10m

$160

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 6/22

5:45 pm-6:20 pm

1 stop24h 35m

Kota Kinabalu

Tue 7/1

7:20 pm-11:15 pm

1 stop27h 55m

$325

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Tue 7/8

6:50 am-12:40 am

1 stop17h 50m

Kota Kinabalu

Wed 7/23

5:20 am-2:05 pm

1 stop8h 45m

$328

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 6/25

11:20 pm-11:30 pm

1 stop24h 10m

Kota Kinabalu

Sat 6/28

12:30 am-10:20 pm

1 stop21h 50m

$362

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Thu 6/26

11:25 am-12:40 am

1 stop13h 15m

Kota Kinabalu

Fri 6/27

5:20 am-4:20 pm

1 stop11h 00m

$402

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 6/18

3:55 am-12:30 am

1 stop20h 35m

Kota Kinabalu

Tue 6/24

1:30 am-1:20 am

1 stop23h 50m

$644

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 6/25

11:10 pm-1:20 am

Nonstop2h 10m

$46

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 6/25

7:35 pm-11:15 am

1 stop15h 40m

$99

Flights are sorted by cheapest round-trip flights first.

Deals found on 4/28

Showing 1-10 of 12 results
1
2

Compare providers for flights from Manila to Kota Kinabalu

Provider information is updated monthly. Please note that these providers often have deals for this flight, but the availability may vary on a day-by-day basis on Cheapflights.
Use the table below to compare price accuracy, trust ratings, and cancellation policies for each provider offering flight deals from Manila to Kota Kinabalu in April.
ProviderPrice AccuracyTrust Score*
eDreamsPrice Accuracy3 starsTrust Score*3 stars
FlightHubPrice Accuracy3 starsTrust Score*2 stars
Trip.comPrice Accuracy1 starTrust Score*3 stars
Kiwi.comPrice Accuracy3 starsTrust Score*3 stars
JetabroadPrice Accuracy3 starsTrust Score*3 stars
OneTravelPrice Accuracy2 starsTrust Score*3 stars
Justfly.comPrice Accuracy3 starsTrust Score*2 stars
CheapOairPrice Accuracy3 starsTrust Score*3 stars
MytripPrice Accuracy3 starsTrust Score*3 stars
FlightnetworkPrice Accuracy-Trust Score*3 stars

*The Trust Score is based on feedback from users after their booking experience. It measures overall satisfaction, helping us identify issues like hidden fees, problems during the ticketing process, and the quality of customer service. This score is our best indicator of the provider's quality and reliability.

  • Most accurate provider: When it comes to deals on Manila-Kota Kinabalu flights, users find the pricing of CheapOair to be most consistent on Cheapflights vs. CheapOair Users can find the same prices on Manila-Kota Kinabalu flight deals on Cheapflights vs. CheapOair >95% of the time. Price accuracy is based on data collected from Manila-Kota Kinabalu flight searches over the past month and is updated monthly.
  • Most trusted provider: When it comes to deals on Manila-Kota Kinabalu flights, Cheapflights users trust CheapOair the most. CheapOair has received a user feedback score of 3 out of 3 stars (3 being the best), meaning they have been trusted the most by Cheapflights users looking for Manila-Kota Kinabalu flight deals. Provider user feedback score is based on Cheapflights searches over the past month and is updated monthly.

Best time to book a flight from Manila to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Manila with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Manila to Kota Kinabalu

How far ahead should I book a flight from Manila to Kota Kinabalu?

Use this chart to determine the optimal time to book a round-trip flight from Manila to Kota Kinabalu. Price data was last updated on April 25, 2025.

The best time to book flights from Manila to Kota Kinabalu is 71 days before your desired departure date. The cost of your flight will likely increase significantly if you book two weeks in advance of your flight.

What is the cheapest time of day to fly from MNL to BKI?

Find hourly flight availability from Manila to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated April 30, 2025.

It’s optimal to fly from Manila to Kota Kinabalu in the morning. By choosing this option you can save up to 6% on the cost of your flight, compared to a flight at noon.

Weekly flight availability from Manila to Kota Kinabalu

Explore weekly flight availability from Manila to Kota Kinabalu. Discover flights operating on different days of the week, giving you the flexibility to choose a travel day that best fits your plans. Compare info to find the most convenient option for your journey. Data last updated April 30, 2025.

The most flights from MNL to BKI are scheduled on a Monday (1 on average). You will have fewer flight options on Monday, which is when the least amount of flights are scheduled (1 on average).

Rainfall in Kota Kinabalu by month

Plan your trip to Kota Kinabalu by taking into account the average rainfall totals by month.

In terms of precipitation, rainfall in Kota Kinabalu ranges from 2.4 - 13.8 inches per month. October is typically the wettest month, when rainfall can reach 13.8 in. February is typically the driest time to visit Kota Kinabalu when rainfall is around 2.4 in.

Temperature in Kota Kinabalu by month

Plan your trip to Kota Kinabalu by taking into account the average temperature totals by month.

If weather is an important factor for your trip to Kota Kinabalu, use this chart to help with planning. For those seeking warmer temperatures, April is the ideal time of year to visit, when temperatures reach an average of 80.6 F. Travelers looking to avoid the cold should look outside of January, when temperatures are typically at their lowest (around 78.8 F).

Reviews of airlines servicing Kota Kinabalu

Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated April 30, 2025.
China Southern
7.5
Good
96 reviews

Entertainment

7.5

Boarding

7.9

Food

7.3

Crew

8.3

Overall

7.5

Comfort

7.8

Reviews

1 / 3
10.0
Excellent

Puey cheng,Apr 2025

SIN - CAN

Seats are clean and comfortable. Most important, the leg room is wider than many other airlines
China Southern
7.5
Good
96 reviews
China Southern
7.5
Good
96 reviews

Entertainment

7.5

Boarding

7.9

Food

7.3

Crew

8.3

Overall

7.5

Comfort

7.8

Reviews

1 / 3
10.0
Excellent

Puey cheng,Apr 2025

SIN - CAN

Seats are clean and comfortable. Most important, the leg room is wider than many other airlines
Malaysia Airlines
7.3
Good
254 reviews
China Southern
7.5
Good
96 reviews

Entertainment

7.5

Boarding

7.9

Food

7.3

Crew

8.3

Overall

7.5

Comfort

7.8

Reviews

1 / 3
10.0
Excellent

Puey cheng,Apr 2025

SIN - CAN

Seats are clean and comfortable. Most important, the leg room is wider than many other airlines
Philippine Airlines
7.2
Good
857 reviews
China Southern
7.5
Good
96 reviews

Entertainment

7.5

Boarding

7.9

Food

7.3

Crew

8.3

Overall

7.5

Comfort

7.8

Reviews

1 / 3
10.0
Excellent

Puey cheng,Apr 2025

SIN - CAN

Seats are clean and comfortable. Most important, the leg room is wider than many other airlines
China Eastern
7.1
Good
148 reviews
China Southern
7.5
Good
96 reviews

Entertainment

7.5

Boarding

7.9

Food

7.3

Crew

8.3

Overall

7.5

Comfort

7.8

Reviews

1 / 3
10.0
Excellent

Puey cheng,Apr 2025

SIN - CAN

Seats are clean and comfortable. Most important, the leg room is wider than many other airlines

Related info for your journey

Find useful and relevant information for your journey from Manila to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airports do I use to fly from Manila to Kota Kinabalu?

    Booking a flight from Manila Ninoy Aquino Intl (MNL) to Kota Kinabalu (BKI) is your only option if you wish to fly from Manila to Kota Kinabalu. On a typical day, there is 1 flight from Ninoy Aquino Intl to Kota Kinabalu, all of which are around 2h 10m for a nonstop flight. You can also purchase a plane ticket from 1 airline when you book a flight from Ninoy Aquino Intl to Kota Kinabalu.

  • How popular is this Manila to Kota Kinabalu flight route?

    This flight path from Manila Ninoy Aquino Intl to Kota Kinabalu was viewed by 17 users in the past month. Keep an eye out for changes in search interest prior to high and low season.

  • What are the cheapest airlines flying from Manila to Kota Kinabalu round-trip?

    Our cheapest airline available from Manila to Kota Kinabalu is Philippines AirAsia. Our recent data shows that you can find tickets from as low as $89 on this airline. Additional options worth looking into are Scoot and China Southern, starting at $160 and $325 round-trip. Philippines AirAsia is currently priced 25% below the average price you’ll pay for this route.

  • What are the cheapest airlines to fly from Manila to Kota Kinabalu one-way?

    To fly one-way, consider booking your trip with Philippines AirAsia, which is currently one of the cheapest options available, starting at $46. Scoot flights start at $99 while deals on Malaysia Airlines start at $402 one-way.

  • What are the cheapest flights from Manila to Kota Kinabalu?

    On average you can expect to pay $71 for a flight from Manila to Kota Kinabalu. The cheapest flight overall is $38 while the most popular route, (Manila Ninoy Aquino Intl - Kota Kinabalu) is currently priced at $294.

  • Can I find deals for flights from Manila to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Manila to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Manila to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Manila to Kota Kinabalu.

  • Can I find deals for business class flights from Manila to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Manila to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

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Complete your trip

Complete your trip to Kota Kinabalu by adding a car rental and/or hotel reservation to your travel itinerary.
Kota Kinabalu car rentals
Kota Kinabalu Airport car rentals

Top airline flying from Manila to Kota Kinabalu

Discover the top airline that operate flights from Manila to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated April 30, 2025.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest$84Average$112FlexibilityNo cancel feeOn-time53%

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