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$542+ Cheap flights from Missoula to Juneau (MSO - JNU)

This is the cheapest round-trip flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 4/20. Fares are subject to change and may not be available on all flights or dates of travel.
MSO — JNU
Dec 6 — Dec 131
Sat 12/6
Sat 12/13
1 adult, Economy
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Find flight deals from Missoula to Juneau

Cheapest flights from Missoula to Juneau
Explore the most affordable flight options available from Missoula to Juneau. Find the lowest fares from popular airlines and budget airlines, with prices last updated on November 6, 2025.

This Alaska Airlines deal was found by Cheapflights users on 11/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 11/2112:05 pmMSO - JNU
2 stops11h 28mAlaska Airlines
Tue 11/259:27 amJNU - MSO
3 stops47h 58mAlaska Airlines
Deal found 11/6$732
This Alaska Airlines deal was found by Cheapflights users on 11/6. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Alaska Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 11/81:59 pmMSO - JNU
3 stops18h 44mAlaska Airlines
Thu 11/137:13 amJNU - MSO
2 stops14h 30mAlaska Airlines
Deal found 11/6$966

Cheap flight deals from Missoula to Juneau

Discover tips and strategies to find the most affordable flight options for your journey from Missoula (MSO) to Juneau (JNU). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated November 6, 2025.

Most accurate provider

eDreams
3 stars

Most trusted provider

eDreams
3 stars

Round-trip from

$542
(Alaska Airlines)
Provider with most accurate pricing for Missoula Johnson-Bell Field-Juneau Intl flight deals.
Search Deals
Provider most trusted by Cheapflights users for Missoula Johnson-Bell Field-Juneau Intl flights.
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From Missoula Johnson-Bell Field to Juneau Intl
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Cheapflights Fare Finder

 
Customize your flight search to find flights from Missoula to Juneau that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated November 6, 2025.
Use the filters below to find and compare flights from Missoula to Juneau that are best for you.

Fly from

Missoula

Fly to

Juneau

Route

Depart

Return

Price

MissoulaJuneau

MSO - JNU

MSOJNU

Missoula Johnson-Bell Field

Mon 4/20

6:35 am-9:23 pm

2 stops16h 48m

Juneau Intl

Thu 4/23

9:30 am-1:43 pm

3 stops26h 13m

$542

MissoulaJuneau

MSO - JNU

MSOJNU

Missoula Johnson-Bell Field

Fri 11/21

12:05 pm-9:33 pm

2 stops11h 28m

Juneau Intl

Tue 11/25

9:27 am-11:25 am

3 stops47h 58m

$732

Flights are sorted by cheapest round-trip flights first.

Deals found on 11/5

Compare providers for flights from Missoula to Juneau

Provider information is updated monthly. Please note that these providers often have deals for this flight, but the availability may vary on a day-by-day basis on Cheapflights.
Use the table below to compare price accuracy, trust ratings, and cancellation policies for each provider offering flight deals from Missoula to Juneau in November.
ProviderPrice AccuracyTrust Score*
ExpediaPrice Accuracy2 starsTrust Score*3 stars
FlightHubPrice Accuracy3 starsTrust Score*1 star
eDreamsPrice Accuracy3 starsTrust Score*3 stars

*The Trust Score is based on feedback from users after their booking experience. It measures overall satisfaction, helping us identify issues like hidden fees, problems during the ticketing process, and the quality of customer service. This score is our best indicator of the provider's quality and reliability.

  • Most accurate provider: When it comes to deals on Missoula-Juneau flights, users find the pricing of eDreams to be most consistent on Cheapflights vs. eDreams Users can find the same prices on Missoula-Juneau flight deals on Cheapflights vs. eDreams >95% of the time. Price accuracy is based on data collected from Missoula-Juneau flight searches over the past month and is updated monthly.
  • Most trusted provider: When it comes to deals on Missoula-Juneau flights, Cheapflights users trust eDreams the most. eDreams has received a user feedback score of 3 out of 3 stars (3 being the best), meaning they have been trusted the most by Cheapflights users looking for Missoula-Juneau flight deals. Provider user feedback score is based on Cheapflights searches over the past month and is updated monthly.

Best time to book a flight from Missoula to Juneau

Have a flexible travel schedule? Discover the best time to fly to Juneau from Missoula with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Reviews of airlines servicing Juneau

Get insights into the airlines that provide service to Juneau. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Juneau. Reviews last updated November 6, 2025.
Read reviews from past customers who have flown Alaska Airlines from Missoula to Juneau. Users can see the overall rating for each airline as well as how each is rated in terms of entertainment options, comfort, food, crew/service, and boarding process.
Alaska Airlines
8.0
Very good
11,247 reviews

Entertainment

7.0

Comfort

7.8

Food

7.1

Overall

8.0

Crew

8.5

Boarding

8.1

Reviews

1 / 20
10.0
Excellent

Anonymous,Sep 2025

BOS - HNL

The flight was awesome but a little long. I would prefer a flight with a layover. The amount of space available was minimal and a little uncomfortable for that long of a flight.
Alaska Airlines
8.0
Very good
11,247 reviews
Alaska Airlines
8.0
Very good
11,247 reviews

Entertainment

7.0

Comfort

7.8

Food

7.1

Overall

8.0

Crew

8.5

Boarding

8.1

Reviews

1 / 20
10.0
Excellent

Anonymous,Sep 2025

BOS - HNL

The flight was awesome but a little long. I would prefer a flight with a layover. The amount of space available was minimal and a little uncomfortable for that long of a flight.

Related info for your journey

Find useful and relevant information for your journey from Missoula to Juneau. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How long is the flight from Missoula to Juneau?

    A quick flight from Missoula to Juneau can take about 16h 48m. Alaska Airlines provides one of the quickest options available for as low as $542. The distance between Missoula and Juneau is about 1158 mi.

  • What is the cheapest airline to fly from Missoula to Juneau round-trip?

    According to our current data, Alaska Airlines ($505), offers the cheapest pricing from Missoula to Juneau.

  • Can I find deals for flights from Missoula to Juneau that include hotel bookings?

    Yes. In addition to deals on Missoula to Juneau flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Missoula to Juneau?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Missoula to Juneau.

  • Can I find deals for business class flights from Missoula to Juneau?

    Yes. Cheapflights offers flight deals from Missoula to Juneau by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

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Top airline flying from Missoula to Juneau

Discover the top airline that operate flights from Missoula to Juneau. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated November 6, 2025.
AirlineCheapestAverageFlexibilityOn-time
Alaska AirlinesCheapest$505Average$680FlexibilityNo cancel feeOn-time75%

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